PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG074390.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 281aa MW: 29094.5 Da PI: 8.7512

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG074390.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.4	2.4e-08	72	97	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + Ck+Gd+C+FaHg+ TRIDC2BG074390.3 72 KTRMCTKYNTAEGCKFGDKCHFAHGE 97 89**********************96 PP
2	zf-CCCH	38.5	1.9e-12	247	272	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C +f++ GtC +G+rC+FaHg+ TRIDC2BG074390.3 247 YKTKICENFLK-GTCTFGERCHFAHGE 272 9********.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence
EESESQQTGL SSKSKPCTKF FSTVGCPFGE GCHFAHFVPG GYQAVSKSHS LGHAAVSAAS 60 RAPADHAASG VKTRMCTKYN TAEGCKFGDK CHFAHGEREL GRPPSSYMSQ ESSYAPPMGG 120 RYGGRHEPPP PASMGPPAGN FGASSTCKVS VDAALAGGII GKGGVNTKQI CRITGVKLSI 180 RDHESNPDLK NIELEGSFDQ IKQANDMVRD LIASISASTP SKNPAGTAAP AGRGGGGGGG 240 PGGRSNYKTK ICENFLKGTC TFGERCHFAH GETEQRKGAA V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	6e-58	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG074390.3