PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG074390.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 308aa MW: 32132 Da PI: 10.1378

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG074390.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.2	2.8e-08	99	124	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + Ck+Gd+C+FaHg+ TRIDC2BG074390.4 99 KTRMCTKYNTAEGCKFGDKCHFAHGE 124 89**********************96 PP
2	zf-CCCH	38.3	2.2e-12	274	299	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C +f++ GtC +G+rC+FaHg+ TRIDC2BG074390.4 274 YKTKICENFLK-GTCTFGERCHFAHGE 299 9********.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence
SAAPHSASAK PQARVSASTR RARHGCRRPQ EIPAGVRQRR LRRREALEST VGCPFGEGCH 60 FAHFVPGGYQ AVSKSHSLGH AAVSAASRAP ADHAASGVKT RMCTKYNTAE GCKFGDKCHF 120 AHGERELGRP PSSYMSQESS YAPPMGGRYG GRHEPPPPAS MGPPAGNFGA SSTCKVSVDA 180 ALAGGIIGKG GVNTKQICRI TGVKLSIRDH ESNPDLKNIE LEGSFDQIKQ ANDMVRDLIA 240 SISASTPSKN PAGTAAPAGR GGGGGGGPGG RSNYKTKICE NFLKGTCTFG ERCHFAHGET 300 EQRKGAAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	1e-50	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG074390.4