PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG074390.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 278aa MW: 28780.1 Da PI: 8.7433

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG074390.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.4	2.4e-08	69	94	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + Ck+Gd+C+FaHg+ TRIDC2BG074390.5 69 KTRMCTKYNTAEGCKFGDKCHFAHGE 94 89**********************96 PP
2	zf-CCCH	38.5	1.9e-12	244	269	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C +f++ GtC +G+rC+FaHg+ TRIDC2BG074390.5 244 YKTKICENFLK-GTCTFGERCHFAHGE 269 9********.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence
CYENSSVLAY SSTTVLRNNT VGCPFGEGCH FAHFVPGGYQ AVSKSHSLGH AAVSAASRAP 60 ADHAASGVKT RMCTKYNTAE GCKFGDKCHF AHGERELGRP PSSYMSQESS YAPPMGGRYG 120 GRHEPPPPAS MGPPAGNFGA SSTCKVSVDA ALAGGIIGKG GVNTKQICRI TGVKLSIRDH 180 ESNPDLKNIE LEGSFDQIKQ ANDMVRDLIA SISASTPSKN PAGTAAPAGR GGGGGGGPGG 240 RSNYKTKICE NFLKGTCTFG ERCHFAHGET EQRKGAAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	4e-51	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG074390.5