PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG074390.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 270aa MW: 27978.5 Da PI: 8.7548

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG074390.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.5	2.3e-08	61	86	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + Ck+Gd+C+FaHg+ TRIDC2BG074390.6 61 KTRMCTKYNTAEGCKFGDKCHFAHGE 86 89**********************96 PP
2	zf-CCCH	38.6	1.8e-12	236	261	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C +f++ GtC +G+rC+FaHg+ TRIDC2BG074390.6 236 YKTKICENFLK-GTCTFGERCHFAHGE 261 9********.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence
MISCNFTIMF LTVGCPFGEG CHFAHFVPGG YQAVSKSHSL GHAAVSAASR APADHAASGV 60 KTRMCTKYNT AEGCKFGDKC HFAHGERELG RPPSSYMSQE SSYAPPMGGR YGGRHEPPPP 120 ASMGPPAGNF GASSTCKVSV DAALAGGIIG KGGVNTKQIC RITGVKLSIR DHESNPDLKN 180 IELEGSFDQI KQANDMVRDL IASISASTPS KNPAGTAAPA GRGGGGGGGP GGRSNYKTKI 240 CENFLKGTCT FGERCHFAHG ETEQRKGAAV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	8e-51	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG074390.6