PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG011270.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 257aa MW: 26492.2 Da PI: 7.7177

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG011270.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	143.9	4.7e-45	27	126	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC ++Cv+apyfp e+p+kfanvhk+FGasnv+kll++lp+++reda+ssl+yeAear++dPvyG+vg i+ lq+q+++l++e TRIDC3AG011270.3 27 PCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELPPHQREDAVSSLAYEAEARVKDPVYGCVGAISVLQRQVHRLQKE 119 7****************************************************************************************** PP DUF260 94 lallkee 100 l+++++e TRIDC3AG011270.3 120 LDAAHTE 126 99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence
MASPSSTGNS AVSVVVAAPT TPGAGAPCAA CKFLRRKCLP GCVFAPYFPP EEPQKFANVH 60 KVFGASNVTK LLNELPPHQR EDAVSSLAYE AEARVKDPVY GCVGAISVLQ RQVHRLQKEL 120 DAAHTELLRY ACGELGGIPT ALPVVTASIP TGRLSSAAMP CPGQLGGGMY SGGSGGGFRR 180 LGLVDAIVPQ PPLSAGCYYN MRSSNNAGGS VAAEVAPVQI PYASMANWAV NAISTITTTS 240 GSESIVMDHK EGGDSSM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.2	3e-62	LBD family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG011270.3