PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG023400.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 223aa MW: 23138.9 Da PI: 9.8914

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG023400.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.9	5.8e-32	18	117	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlka 92 aCa+Ck++rrkC+++C la yfpa+++++f+++h +FG++n++kl+ka +e r++a+++l++eA++r rdP +G+++ ++ l+++ + l+a TRIDC3AG023400.1 18 ACAVCKHQRRKCEPNCELAAYFPANRMNDFRALHLVFGVANLTKLIKANATEAaRRRAAETLTWEARWRERDPSEGCYREVSCLRRENAVLRA 110 7********************************************9977766************************************* PP DUF260 93 elallke 99 e a+l++ TRIDC3AG023400.1 111 ENAALRR 117 9998775 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
MTGGVNGNGG GGGGNGGACA VCKHQRRKCE PNCELAAYFP ANRMNDFRAL HLVFGVANLT 60 KLIKANATEA ARRRAAETLT WEARWRERDP SEGCYREVSC LRRENAVLRA ENAALRRRAN 120 QCACCATTLQ QQQQQQILLV SAYNNGARPP GGVLHGASAG VVPGGFYSGN AGAVRAANGN 180 GAMPARPHVS APAPQTTMAG YAQGDRHHAA SGGANGTGAA GQA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	1e-15	LBD family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG023400.1