PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG024940.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 426aa MW: 45889.5 Da PI: 8.3136

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG024940.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.4	1.8e-11	11	36	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C +GdrC+++H++ TRIDC3AG024940.1 11 DQADCIYYLRTGACGFGDRCRYNHPR 36 6789********************96 PP
2	zf-CCCH	39.9	7.1e-13	61	85	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCk+G++Ck++H++ TRIDC3AG024940.1 61 QPVCEYYMKTGTCKFGSNCKYHHPK 85 789********************96 PP
3	zf-CCCH	40	6.4e-13	105	130	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++CkF+H++ TRIDC3AG024940.1 105 GEKECSYYMKTGQCKFGSTCKFHHPE 130 7899********************96 PP
4	zf-CCCH	38.6	1.8e-12	258	284	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++Ck++H++ TRIDC3AG024940.1 258 PGQPECQYYMRTGDCKFGATCKYHHPR 284 5789*********************96 PP
5	zf-CCCH	34.2	4.4e-11	307	330	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+++a++G+C+yG Ck+ H++ TRIDC3AG024940.1 307 QPCSYYAQNGYCRYGVACKYDHPM 330 69********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
GDGARLPERP DQADCIYYLR TGACGFGDRC RYNHPRDRGG TEFGGGAKNA VALDYPERLG 60 QPVCEYYMKT GTCKFGSNCK YHHPKQDGSV QPVMLNSNGF PLRPGEKECS YYMKTGQCKF 120 GSTCKFHHPE FGGVPVTPGI YPPLQSSTVP SPHPYAPLTN WQMGRPPVVP GSYMPGSYTP 180 MMLSSGMIPL QGWSPYPASV NPVASGGVQQ TVQAGPMYGI GHHGSSSTIA YGGPYMPYSS 240 STIQSSNNQQ EHGFPERPGQ PECQYYMRTG DCKFGATCKY HHPRDWSSPK SNYMFSPFCL 300 PLRPGAQPCS YYAQNGYCRY GVACKYDHPM GTLGYSSSPF PLSDVPIAPY PLGFSIATLA 360 PSSSSQDLRP EYISAKDPSV NQVGSPVAAS EPSGSILPKG VFPPDTVMRA QTNTTTGGSS 420 SPGGGR

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

GDGARLPERP DQADCIYYLR TGACGFGDRC RYNHPRDRGG TEFGGGAKNA VALDYPERLG  60
QPVCEYYMKT GTCKFGSNCK YHHPKQDGSV QPVMLNSNGF PLRPGEKECS YYMKTGQCKF  120
GSTCKFHHPE FGGVPVTPGI YPPLQSSTVP SPHPYAPLTN WQMGRPPVVP GSYMPGSYTP  180
MMLSSGMIPL QGWSPYPASV NPVASGGVQQ TVQAGPMYGI GHHGSSSTIA YGGPYMPYSS  240
STIQSSNNQQ EHGFPERPGQ PECQYYMRTG DCKFGATCKY HHPRDWSSPK SNYMFSPFCL  300
PLRPGAQPCS YYAQNGYCRY GVACKYDHPM GTLGYSSSPF PLSDVPIAPY PLGFSIATLA  360
PSSSSQDLRP EYISAKDPSV NQVGSPVAAS EPSGSILPKG VFPPDTVMRA QTNTTTGGSS  420
SPGGGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-121	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG024940.1