PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG024940.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 413aa MW: 44526 Da PI: 8.4028

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG024940.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31	4.3e-10	2	23	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C +++rtG C +GdrC+++H++ TRIDC3AG024940.3 2 CIYYLRTGACGFGDRCRYNHPR 23 ********************96 PP
2	zf-CCCH	39.9	6.9e-13	48	72	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCk+G++Ck++H++ TRIDC3AG024940.3 48 QPVCEYYMKTGTCKFGSNCKYHHPK 72 789********************96 PP
3	zf-CCCH	40.1	6.2e-13	92	117	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++CkF+H++ TRIDC3AG024940.3 92 GEKECSYYMKTGQCKFGSTCKFHHPE 117 7899********************96 PP
4	zf-CCCH	38.7	1.7e-12	245	271	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++Ck++H++ TRIDC3AG024940.3 245 PGQPECQYYMRTGDCKFGATCKYHHPR 271 5789*********************96 PP
5	zf-CCCH	34.2	4.2e-11	294	317	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+++a++G+C+yG Ck+ H++ TRIDC3AG024940.3 294 QPCSYYAQNGYCRYGVACKYDHPM 317 69********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence
DCIYYLRTGA CGFGDRCRYN HPRDRGGTEF GGGAKNAVAL DYPERLGQPV CEYYMKTGTC 60 KFGSNCKYHH PKQDGSVQPV MLNSNGFPLR PGEKECSYYM KTGQCKFGST CKFHHPEFGG 120 VPVTPGIYPP LQSSTVPSPH PYAPLTNWQM GRPPVVPGSY MPGSYTPMML SSGMIPLQGW 180 SPYPASVNPV ASGGVQQTVQ AGPMYGIGHH GSSSTIAYGG PYMPYSSSTI QSSNNQQEHG 240 FPERPGQPEC QYYMRTGDCK FGATCKYHHP RDWSSPKSNY MFSPFCLPLR PGAQPCSYYA 300 QNGYCRYGVA CKYDHPMGTL GYSSSPFPLS DVPIAPYPLG FSIATLAPSS SSQDLRPEYI 360 SAKDPSVNQV GSPVAASEPS GSILPKGVFP PDTVMRAQTN TTTGGSSSPG GGR

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence

DCIYYLRTGA CGFGDRCRYN HPRDRGGTEF GGGAKNAVAL DYPERLGQPV CEYYMKTGTC  60
KFGSNCKYHH PKQDGSVQPV MLNSNGFPLR PGEKECSYYM KTGQCKFGST CKFHHPEFGG  120
VPVTPGIYPP LQSSTVPSPH PYAPLTNWQM GRPPVVPGSY MPGSYTPMML SSGMIPLQGW  180
SPYPASVNPV ASGGVQQTVQ AGPMYGIGHH GSSSTIAYGG PYMPYSSSTI QSSNNQQEHG  240
FPERPGQPEC QYYMRTGDCK FGATCKYHHP RDWSSPKSNY MFSPFCLPLR PGAQPCSYYA  300
QNGYCRYGVA CKYDHPMGTL GYSSSPFPLS DVPIAPYPLG FSIATLAPSS SSQDLRPEYI  360
SAKDPSVNQV GSPVAASEPS GSILPKGVFP PDTVMRAQTN TTTGGSSSPG GGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-118	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG024940.3