PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG024970.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 359aa MW: 38417.7 Da PI: 8.6198

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG024970.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.1	3e-08	1	18	10	27
GGTS--TTTTT-SS-SSS CS zf-CCCH 10 artGtCkyGdrCkFaHgp 27 +++GtCk+G++Ck++H++ TRIDC3AG024970.2 1 MKNGTCKFGSNCKYNHPR 18 89**************96 PP
2	zf-CCCH	35.3	2e-11	39	63	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G++CkF+H++ TRIDC3AG024970.2 39 EKECSYYIKTGHCKFGSTCKFHHPE 63 689********************96 PP
3	zf-CCCH	38.8	1.5e-12	193	219	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tGtCk+G++Ck++H++ TRIDC3AG024970.2 193 PGQPECHHYMKTGTCKFGSTCKYNHPQ 219 5789*********************97 PP
4	zf-CCCH	25.8	1.9e-08	242	264	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C ++++ G+Ck+G+ CkF H+ TRIDC3AG024970.2 242 QPCLYYSQHGFCKFGPGCKFDHP 264 69********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence
MKNGTCKFGS NCKYNHPREG GSVQPVVLNS CGYPLRLGEK ECSYYIKTGH CKFGSTCKFH 60 HPEGPEHGVV SETPNMYPPV QQLPVSSPLP YPPLASWQLG RPSVLPGSFF PGSYPPMMHP 120 SAVMPMQGWN PYMPPINQVA SAGGQQTVQA GPLYGLSHQG PPSAVAYGSN YASLSSSTWP 180 SSDKQEVVFP ERPGQPECHH YMKTGTCKFG STCKYNHPQY LSTPRSNYML SPLGLPIRPG 240 AQPCLYYSQH GFCKFGPGCK FDHPLGALSY SPSASSLGDV PIAPYPLSLP VAPMAPSPLS 300 SGLRPDYILA KDSSANQPAS PGTTFGNAGQ LSKIYAPHML LRPPTSATGA TVTIHGGEF

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence

MKNGTCKFGS NCKYNHPREG GSVQPVVLNS CGYPLRLGEK ECSYYIKTGH CKFGSTCKFH  60
HPEGPEHGVV SETPNMYPPV QQLPVSSPLP YPPLASWQLG RPSVLPGSFF PGSYPPMMHP  120
SAVMPMQGWN PYMPPINQVA SAGGQQTVQA GPLYGLSHQG PPSAVAYGSN YASLSSSTWP  180
SSDKQEVVFP ERPGQPECHH YMKTGTCKFG STCKYNHPQY LSTPRSNYML SPLGLPIRPG  240
AQPCLYYSQH GFCKFGPGCK FDHPLGALSY SPSASSLGDV PIAPYPLSLP VAPMAPSPLS  300
SGLRPDYILA KDSSANQPAS PGTTFGNAGQ LSKIYAPHML LRPPTSATGA TVTIHGGEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	6e-88	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG024970.2