PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG024970.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 179aa MW: 19626.3 Da PI: 8.4651

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG024970.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40	6.3e-13	21	47	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C +++++GtCk+G++Ck++H++ TRIDC3AG024970.6 21 PGQPPCEYYMKNGTCKFGSNCKYNHPR 47 5899*********************96 PP
2	zf-CCCH	36.6	7.7e-12	68	92	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G++CkF+H++ TRIDC3AG024970.6 68 EKECSYYIKTGHCKFGSTCKFHHPE 92 689********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence
APPRFDGGTR TARTVEYPER PGQPPCEYYM KNGTCKFGSN CKYNHPREGG SVQPVVLNSC 60 GYPLRLGEKE CSYYIKTGHC KFGSTCKFHH PEGPEHGVVS ETPNMYPPVQ QLPVSSPLPY 120 PPLASWQLGR PSVLPGSFFP GSYPPMMHPS AVMPMQGWNP YMPPINQVAS AGGQQTVQA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	6e-43	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG024970.6