PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG024970.7

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 366aa MW: 39379.8 Da PI: 8.8228

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG024970.7	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.3	7e-10	5	25	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 r+++++GtCk+G++Ck++H++ TRIDC3AG024970.7 5 RYYMKNGTCKFGSNCKYNHPR 25 79*****************96 PP
2	zf-CCCH	35.2	2e-11	46	70	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G++CkF+H++ TRIDC3AG024970.7 46 EKECSYYIKTGHCKFGSTCKFHHPE 70 689********************96 PP
3	zf-CCCH	38.8	1.6e-12	200	226	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tGtCk+G++Ck++H++ TRIDC3AG024970.7 200 PGQPECHHYMKTGTCKFGSTCKYNHPQ 226 5789*********************97 PP
4	zf-CCCH	25.7	1.9e-08	249	271	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C ++++ G+Ck+G+ CkF H+ TRIDC3AG024970.7 249 QPCLYYSQHGFCKFGPGCKFDHP 271 69********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence
SHRVRYYMKN GTCKFGSNCK YNHPREGGSV QPVVLNSCGY PLRLGEKECS YYIKTGHCKF 60 GSTCKFHHPE GPEHGVVSET PNMYPPVQQL PVSSPLPYPP LASWQLGRPS VLPGSFFPGS 120 YPPMMHPSAV MPMQGWNPYM PPINQVASAG GQQTVQAGPL YGLSHQGPPS AVAYGSNYAS 180 LSSSTWPSSD KQEVVFPERP GQPECHHYMK TGTCKFGSTC KYNHPQYLST PRSNYMLSPL 240 GLPIRPGAQP CLYYSQHGFC KFGPGCKFDH PLGALSYSPS ASSLGDVPIA PYPLSLPVAP 300 MAPSPLSSGL RPDYILAKDS SANQPASPGT TFGNAGQLSK IYAPHMLLRP PTSATGATVT 360 IHGGEF

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence

SHRVRYYMKN GTCKFGSNCK YNHPREGGSV QPVVLNSCGY PLRLGEKECS YYIKTGHCKF  60
GSTCKFHHPE GPEHGVVSET PNMYPPVQQL PVSSPLPYPP LASWQLGRPS VLPGSFFPGS  120
YPPMMHPSAV MPMQGWNPYM PPINQVASAG GQQTVQAGPL YGLSHQGPPS AVAYGSNYAS  180
LSSSTWPSSD KQEVVFPERP GQPECHHYMK TGTCKFGSTC KYNHPQYLST PRSNYMLSPL  240
GLPIRPGAQP CLYYSQHGFC KFGPGCKFDH PLGALSYSPS ASSLGDVPIA PYPLSLPVAP  300
MAPSPLSSGL RPDYILAKDS SANQPASPGT TFGNAGQLSK IYAPHMLLRP PTSATGATVT  360
IHGGEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	3e-89	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG024970.7