PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG032870.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 919aa MW: 95768.1 Da PI: 4.2483

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG032870.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	35	2.3e-11	849	873	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr l++YPrGA +V+Ca C t+ TRIDC3AG032870.1 849 CGSCRELIAYPRGAVHVQCAACGTI 873 **********************997 PP
2	zf-LSD1	39.3	1.1e-12	887	911	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg C +lL+YP+GAp+V+C+lC +V TRIDC3AG032870.1 887 CGRCEILLMYPFGAPAVKCSLCLFV 911 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 919 aa Download sequence
AFSPSQRPPP LTAPRPMLSS PEIGPPSENK PMISPPLFPS AAPPQETPQP TTADPLEPAQ 60 SDHAESTPPP HPGVTATSPE AYESTVSAPV HIDGKKREAG RPPSLSASPA LEATKPEQHA 120 SPLPPPAAEA FPEAATTEAS PSPSHQIVAA SVVETPSPST PSSPPASTAG ALSDGSVADS 180 AAMVSEEAGR LPAALESMDA NRPTAPAPPT LPLKSEPEGL LPQQHRRPPW PTVLPGCENF 240 EHSQPPSPRP PQVEAAHGLP DAAQTNAIAV TSEEPGAPSA WKSDSEGSFE VAMHIPLSSP 300 TEAEPCSPDM APPGFEKFKF SWPPLPPPNL SVKTAHSLLN PAVPEGVAKP LPVLETMDTK 360 AVAARNLPLP SSESGAEEPL WQPLLRSPSL ITQAEPCSPD MPPPGFENFK LSCMPLSNEN 420 TYASSDVIAA KAVAVAPEEA VLPVPTLKAI DVETDSACNL LPPLGSKLEG LLKQPSLRST 480 TPVAESGPCS PEIAPPGFES FRLSWQPSST PPSGTAYIMP DAAVMPLPVT LEEAAGSPPA 540 LEAMDVDMNA IHPLTVPLES GVEGSLQEPQ PRPPSPILQD VPSSPDMAPP GFENFKSSRL 600 LLPSPVFSQT AYTLHDSTTT IAEYVSEEAA QLSPALEAID VKMETSPESG AEGSLPQQLH 660 WRPSPKENST ACSPEMVPSG HENLQPLPYP AFLPQAQTPD VVATGVVIGA LDQVRHPAPV 720 LGTIEEGTSP ILSPPLEGGS LPQLEPQMNS VTAHVVDTPT HVPTTDCVAV NSEGTVLPPP 780 ALQAMVTNMD SATTSLPRLE NGAEGSLPQL RQQSSSPNVQ AAPCSLDAVE LLPPPPPPFV 840 NKEVGQMVCG SCRELIAYPR GAVHVQCAAC GTINLVLEAH EVGNVHCGRC EILLMYPFGA 900 PAVKCSLCLF VTEIGVSEL

Sequence ? help Back to Top

Protein Sequence Length: 919 aa Download sequence

AFSPSQRPPP LTAPRPMLSS PEIGPPSENK PMISPPLFPS AAPPQETPQP TTADPLEPAQ  60
SDHAESTPPP HPGVTATSPE AYESTVSAPV HIDGKKREAG RPPSLSASPA LEATKPEQHA  120
SPLPPPAAEA FPEAATTEAS PSPSHQIVAA SVVETPSPST PSSPPASTAG ALSDGSVADS  180
AAMVSEEAGR LPAALESMDA NRPTAPAPPT LPLKSEPEGL LPQQHRRPPW PTVLPGCENF  240
EHSQPPSPRP PQVEAAHGLP DAAQTNAIAV TSEEPGAPSA WKSDSEGSFE VAMHIPLSSP  300
TEAEPCSPDM APPGFEKFKF SWPPLPPPNL SVKTAHSLLN PAVPEGVAKP LPVLETMDTK  360
AVAARNLPLP SSESGAEEPL WQPLLRSPSL ITQAEPCSPD MPPPGFENFK LSCMPLSNEN  420
TYASSDVIAA KAVAVAPEEA VLPVPTLKAI DVETDSACNL LPPLGSKLEG LLKQPSLRST  480
TPVAESGPCS PEIAPPGFES FRLSWQPSST PPSGTAYIMP DAAVMPLPVT LEEAAGSPPA  540
LEAMDVDMNA IHPLTVPLES GVEGSLQEPQ PRPPSPILQD VPSSPDMAPP GFENFKSSRL  600
LLPSPVFSQT AYTLHDSTTT IAEYVSEEAA QLSPALEAID VKMETSPESG AEGSLPQQLH  660
WRPSPKENST ACSPEMVPSG HENLQPLPYP AFLPQAQTPD VVATGVVIGA LDQVRHPAPV  720
LGTIEEGTSP ILSPPLEGGS LPQLEPQMNS VTAHVVDTPT HVPTTDCVAV NSEGTVLPPP  780
ALQAMVTNMD SATTSLPRLE NGAEGSLPQL RQQSSSPNVQ AAPCSLDAVE LLPPPPPPFV  840
NKEVGQMVCG SCRELIAYPR GAVHVQCAAC GTINLVLEAH EVGNVHCGRC EILLMYPFGA  900
PAVKCSLCLF VTEIGVSEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	1e-28	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG032870.1