PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG032870.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 873aa MW: 91096.5 Da PI: 4.1998

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG032870.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	35.1	2.2e-11	833	857	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr l++YPrGA +V+Ca C t+ TRIDC3AG032870.3 833 CGSCRELIAYPRGAVHVQCAACGTI 857 **********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 873 aa Download sequence
MLSSPEIGPP SENKPMISPP LFPSAAPPQE TPQPTTADPL EPAQSDHAES TPPPHPGVTA 60 TSPEAYESTV SAPVHIDGKK REAGRPPSLS ASPALEATKP EQHASPLPPP AAEAFPEAAT 120 TEASPSPSHQ IVAASVVETP SPSTPSSPPA STAGALSDGS VADSAAMVSE EAGRLPAALE 180 SMDANRPTAP APPTLPLKSE PEGLLPQQHR RPPWPTVLPG CENFEHSQPP SPRPPQVEAA 240 HGLPDAAQTN AIAVTSEEPG APSAWKSDSE GSFEVAMHIP LSSPTEAEPC SPDMAPPGFE 300 KFKFSWPPLP PPNLSVKTAH SLLNPAVPEG VAKPLPVLET MDTKAVAARN LPLPSSESGA 360 EEPLWQPLLR SPSLITQAEP CSPDMPPPGF ENFKLSCMPL SNENTYASSD VIAAKAVAVA 420 PEEAVLPVPT LKAIDVETDS ACNLLPPLGS KLEGLLKQPS LRSTTPVAES GPCSPEIAPP 480 GFESFRLSWQ PSSTPPSGTA YIMPDAAVMP LPVTLEEAAG SPPALEAMDV DMNAIHPLTV 540 PLESGVEGSL QEPQPRPPSP ILQDVPSSPD MAPPGFENFK SSRLLLPSPV FSQTAYTLHD 600 STTTIAEYVS EEAAQLSPAL EAIDVKMETS PESGAEGSLP QQLHWRPSPK ENSTACSPEM 660 VPSGHENLQP LPYPAFLPQA QTPDVVATGV VIGALDQVRH PAPVLGTIEE GTSPILSPPL 720 EGGSLPQLEP QMNSVTAHVV DTPTHVPTTD CVAVNSEGTV LPPPALQAMV TNMDSATTSL 780 PRLENGAEGS LPQLRQQSSS PNVQAAPCSL DAVELLPPPP PPFVNKEVGQ MVCGSCRELI 840 AYPRGAVHVQ CAACGTINLV LEGTYHFYFV QQF

Sequence ? help Back to Top

Protein Sequence Length: 873 aa Download sequence

MLSSPEIGPP SENKPMISPP LFPSAAPPQE TPQPTTADPL EPAQSDHAES TPPPHPGVTA  60
TSPEAYESTV SAPVHIDGKK REAGRPPSLS ASPALEATKP EQHASPLPPP AAEAFPEAAT  120
TEASPSPSHQ IVAASVVETP SPSTPSSPPA STAGALSDGS VADSAAMVSE EAGRLPAALE  180
SMDANRPTAP APPTLPLKSE PEGLLPQQHR RPPWPTVLPG CENFEHSQPP SPRPPQVEAA  240
HGLPDAAQTN AIAVTSEEPG APSAWKSDSE GSFEVAMHIP LSSPTEAEPC SPDMAPPGFE  300
KFKFSWPPLP PPNLSVKTAH SLLNPAVPEG VAKPLPVLET MDTKAVAARN LPLPSSESGA  360
EEPLWQPLLR SPSLITQAEP CSPDMPPPGF ENFKLSCMPL SNENTYASSD VIAAKAVAVA  420
PEEAVLPVPT LKAIDVETDS ACNLLPPLGS KLEGLLKQPS LRSTTPVAES GPCSPEIAPP  480
GFESFRLSWQ PSSTPPSGTA YIMPDAAVMP LPVTLEEAAG SPPALEAMDV DMNAIHPLTV  540
PLESGVEGSL QEPQPRPPSP ILQDVPSSPD MAPPGFENFK SSRLLLPSPV FSQTAYTLHD  600
STTTIAEYVS EEAAQLSPAL EAIDVKMETS PESGAEGSLP QQLHWRPSPK ENSTACSPEM  660
VPSGHENLQP LPYPAFLPQA QTPDVVATGV VIGALDQVRH PAPVLGTIEE GTSPILSPPL  720
EGGSLPQLEP QMNSVTAHVV DTPTHVPTTD CVAVNSEGTV LPPPALQAMV TNMDSATTSL  780
PRLENGAEGS LPQLRQQSSS PNVQAAPCSL DAVELLPPPP PPFVNKEVGQ MVCGSCRELI  840
AYPRGAVHVQ CAACGTINLV LEGTYHFYFV QQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	4e-11	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG032870.3