PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG032870.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 93aa MW: 9877.89 Da PI: 7.6006

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG032870.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	39.3	1e-12	3	27	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr l++YPrGA +V+Ca C t+ TRIDC3AG032870.5 3 CGSCRELIAYPRGAVHVQCAACGTI 27 **********************997 PP
2	zf-LSD1	43.6	4.9e-14	41	65	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg C +lL+YP+GAp+V+C+lC +V TRIDC3AG032870.5 41 CGRCEILLMYPFGAPAVKCSLCLFV 65 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 93 aa Download sequence
MVCGSCRELI AYPRGAVHVQ CAACGTINLV LEAHEVGNVH CGRCEILLMY PFGAPAVKCS 60 LCLFVTEIGK NKIAPIVYAC TCVPAPLINM LPS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	5e-31	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG032870.5