PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG033290.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 248aa MW: 27136.9 Da PI: 8.3554

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG033290.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.8	2.1e-09	67	93	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+ +tG C yG +C+F+H++ TRIDC3AG033290.2 67 PGEVDCSFYIKTGSCMYGRTCRFNHPE 93 57899********************96 PP
2	zf-CCCH	34.8	2.8e-11	137	161	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+ +tG+Ck+ ++CkF+H+ TRIDC3AG033290.2 137 GETVCDFYKKTGFCKFSEKCKFHHP 161 6789********************9 PP
3	zf-CCCH	40	6.4e-13	194	217	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C ++++tG Ck+G +CkF H+p TRIDC3AG033290.2 194 EACAYYMKTGACKFGVQCKFDHPP 217 78********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
GKCKLGTNCK FIHAKDMEPP SSGGNESENT ATAEAAGHHG AVHDSVSAKK LAPVALEHNS 60 KGMPIRPGEV DCSFYIKTGS CMYGRTCRFN HPERHIQASV VPGEMLNPAV KFLPSFDFRV 120 THVPIEPEPI TYPQRPGETV CDFYKKTGFC KFSEKCKFHH PVDRSAPDSI AKWEPSQQPV 180 TLTVAGFPRR EDAEACAYYM KTGACKFGVQ CKFDHPPLGE AIAKVSKHGE GKEGGKKKVV 240 GLSYVLEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-64	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG033290.2