PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG033290.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 156aa MW: 17575.6 Da PI: 8.8545

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG033290.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.4	2.9e-09	50	69	7	26
SGGGGTS--TTTTT-SS-SS CS zf-CCCH 7 rffartGtCkyGdrCkFaHg 26 +f+ +tG+Ck+ ++CkF+H+ TRIDC3AG033290.3 50 QFYKKTGFCKFSEKCKFHHP 69 59*****************9 PP
2	zf-CCCH	40.9	3.3e-13	102	125	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C ++++tG Ck+G +CkF H+p TRIDC3AG033290.3 102 EACAYYMKTGACKFGVQCKFDHPP 125 78********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence
MCRLNLSQSP TLRGLEKLFV MYVHNHPCTN CCSICPMSWT VLLILLWLMQ FYKKTGFCKF 60 SEKCKFHHPV DRSAPDSIAK WEPSQQPVTL TVAGFPRRED AEACAYYMKT GACKFGVQCK 120 FDHPPLGEAI AKVSKHGEGK EGGKKKVVGL SYVLEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	2e-29	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG033290.3