PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3AG033300.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 188aa    MW: 20937.8 Da    PI: 8.478
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3AG033300.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH345.1e-116388227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      ++++C f++rt tCky ++CkF H++
  TRIDC3AG033300.2 63 GEKECAFYMRTRTCKYEETCKFDHPQ 88
                      7899********************97 PP
2zf-CCCH39.68.8e-13112138127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C+ff +tG+Ck+G++CkF+H++
  TRIDC3AG033300.2 112 PGEPNCPFFVKTGECKFGSKCKFNHPK 138
                       5799*********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    
SIWFSNTTSL IKFFCISTIV LYHQSIMGSH STIGQSDAFY SPNTMVKRPR LESSLPIYPQ  60
RPGEKECAFY MRTRTCKYEE TCKFDHPQWV PEGGIPNWKE GTKAGESYPE RPGEPNCPFF  120
VKTGECKFGS KCKFNHPKKK DDGTVAGPGD KESLFSANST LPVKPSEPCP ESLISGNSTL  180
PVKPSKPC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.14e-55C3H family protein