PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG038870.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

RAV

Protein Properties

Length: 389aa MW: 41064.4 Da PI: 9.7489

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG038870.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	35.7	2.1e-11	86	134	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s++kGV + +grW A+I++ r +r++lg+f + +Aa+a++ a+++++g TRIDC3AG038870.2 86 SRFKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAGEADAARAYDVAAQRFRG 134 689*9788.8*****......44******99***********98 PP
2	B3	96.8	1.4e-30	215	307	1	86
EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+ tpsdv+k++rlv+pk++ae+h g + ++ l +ed g++W+++++y+++s++yvltkGW++Fvk++gL +gD+v F++ TRIDC3AG038870.2 215 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpaaG-GESKGLLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLGAGDVVGFYRA 306 89*****************************53.456888**********************************************965 PP S CS B3 86 g 86 TRIDC3AG038870.2 307 A 307 4 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
ILHSYCRQCR AVTEMDSTSC LADDTSSGGA ASTDKLKALA AAAAAAAAGP LERMGSGASA 60 VLDAAEPGSE ADSGGRAAPA GKLPSSRFKG VVPQPNGRWG AQIYERHQRV WLGTFAGEAD 120 AARAYDVAAQ RFRGRDAVTN FRPLADADPD AAAELRFLAA RSKAEVVDML RKHTYFDELA 180 QSKRAFAASA ALSAPTTSHG HASPPTPAAA REHLFDKTVT PSDVGKLNRL VIPKQHAEKH 240 FPLQLPAAGG ESKGLLLNFE DAAGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKGLGAGDV 300 VGFYRAAAGS TGEASKLFID CKQRPSTNSP APADPVDQSP APVHKAVRIF GVDLLTAPAS 360 PGCKRARDMV KPPAPTAALK KQCIELALA

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

ILHSYCRQCR AVTEMDSTSC LADDTSSGGA ASTDKLKALA AAAAAAAAGP LERMGSGASA  60
VLDAAEPGSE ADSGGRAAPA GKLPSSRFKG VVPQPNGRWG AQIYERHQRV WLGTFAGEAD  120
AARAYDVAAQ RFRGRDAVTN FRPLADADPD AAAELRFLAA RSKAEVVDML RKHTYFDELA  180
QSKRAFAASA ALSAPTTSHG HASPPTPAAA REHLFDKTVT PSDVGKLNRL VIPKQHAEKH  240
FPLQLPAAGG ESKGLLLNFE DAAGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKGLGAGDV  300
VGFYRAAAGS TGEASKLFID CKQRPSTNSP APADPVDQSP APVHKAVRIF GVDLLTAPAS  360
PGCKRARDMV KPPAPTAALK KQCIELALA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-100	RAV family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG038870.2