PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3AG042060.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 193aa    MW: 22337.6 Da    PI: 8.7683
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3AG042060.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.72.6e-22957149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      kri+n ++rq tf kRr g++KKA EL vLCda+ ++++fs +gkly y
  TRIDC3AG042060.2  9 KRIDNPTQRQSTFYKRRDGLFKKARELAVLCDADLLLLLFSASGKLYQY 57
                      79*********************************************99 PP
2K-box31.48.1e-1272165194
             K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                       y++s+++++++   ++ ++el+k+ k  + L++e+R +  +d e+ ++  L  Le++Le ++ k+Rs K++ +  ++++l ++ +  q e   
  TRIDC3AG042060.2  72 YEASTHTKVWSDIRQERRRELEKVAKMCDLLEKELRFMTVDDGERYTVPSLAALEHNLEAAMHKVRSEKDRKIGGEMSYLENMIRGKQAERYG 164
                       56778888**********************************************************************999988877777666 PP

             K-box  94 L 94 
                       L
  TRIDC3AG042060.2 165 L 165
                       6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MGRGRSEIKR IDNPTQRQST FYKRRDGLFK KARELAVLCD ADLLLLLFSA SGKLYQYLAP  60
TVPSVKEFVE RYEASTHTKV WSDIRQERRR ELEKVAKMCD LLEKELRFMT VDDGERYTVP  120
SLAALEHNLE AAMHKVRSEK DRKIGGEMSY LENMIRGKQA ERYGLCDKDK NSTQSEDLKP  180
FNESEAIVVV VLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.15e-23MIKC_MADS family protein