PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG045310.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 235aa MW: 25064.2 Da PI: 7.0727

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG045310.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.5	1.6e-36	43	147	1	101
DUF260 1 aCaaCkvlrrkCakdCvlapyf....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrr+C+++Cv+ap+f ++ +++fa+vh++FGasnv kll+++p r+d++++++yeA+ar+ dPvyG+vg+il+lq+q++ TRIDC3AG045310.1 43 PCGACKFLRRRCVPGCVFAPHFsgsgRERGAAQFAAVHRVFGASNVAKLLSRVPVALRRDTARTVCYEAQARVADPVYGCVGTILALQHQVAL 135 7*******************766333448********************************************************** PP DUF260 90 lkaelallkeel 101 l+ +l++l+++l TRIDC3AG045310.1 136 LQGQLSVLQTQL 147 ****999875 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MQSAMQEEPA PPRKRGGAVH GSAAREQQQQ ADETSSSAGP GAPCGACKFL RRRCVPGCVF 60 APHFSGSGRE RGAAQFAAVH RVFGASNVAK LLSRVPVALR RDTARTVCYE AQARVADPVY 120 GCVGTILALQ HQVALLQGQL SVLQTQLFNC RLALASTHPD GAEQLAVLQP AYSAASAPSQ 180 MVNYDDLPQA VDFMDVEPQM RGLESLQLSQ PPHRDEDESQ GVSPFSDNAG GQRQL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03760.1	1e-52	LBD family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG045310.1