PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG052980.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB

Protein Properties

Length: 441aa MW: 48066 Da PI: 6.7624

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG052980.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.1	2.3e-19	143	188	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+WT+eEdell ++v ++G + W+tI+++++ gR +kqc++rw ++ TRIDC3AG052980.1 143 RGPWTEEEDELLRRLVDEHGEHKWATISEHLP-GRIGKQCRERWTNH 188 89****************************.*********997 PP
2	Myb_DNA-binding	50.8	3.9e-16	199	238	4	45
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+ +d l+da+k +G++ W++Iar+++ gR+++ +k++w+ TRIDC3AG052980.1 199 WTEADDIMLIDAHKVHGNR-WSSIARCLP-GRSENAVKNHWN 238 *****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
SSLWQTLPLS LSLDSSKFHP PSPTSSFVSK FRPPAMASLG EMLLNQELAA VAAMSADVHG 60 RFERYILSPA HGFPHFQQAG SAPAGFPDTG LLVSGLGMPP STFIMPEGTH AAAGYGAEAV 120 PVEIPVVRRQ RPAAKNDGAT PFRGPWTEEE DELLRRLVDE HGEHKWATIS EHLPGRIGKQ 180 CRERWTNHVR PGIKKEHIWT EADDIMLIDA HKVHGNRWSS IARCLPGRSE NAVKNHWNAT 240 KRSLKSKRRF KKKTSQQAAP GQFTLLEEYI RDKMMADENV APPSPSAGVA YDGQIVPCAA 300 AMLAVSSPHG MGQYLHPANA AGSSSQAGMM NLSVPLPDLN AYSGEMLERY YYPTYSNNLL 360 PYGPEPAFPQ MFSAQGRMHA ACTNLNLFPL PQHPGGGYYG SETGRSSAGG SSDQDEDVAQ 420 MASREFQTSE DEATLDLTGF N

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

SSLWQTLPLS LSLDSSKFHP PSPTSSFVSK FRPPAMASLG EMLLNQELAA VAAMSADVHG  60
RFERYILSPA HGFPHFQQAG SAPAGFPDTG LLVSGLGMPP STFIMPEGTH AAAGYGAEAV  120
PVEIPVVRRQ RPAAKNDGAT PFRGPWTEEE DELLRRLVDE HGEHKWATIS EHLPGRIGKQ  180
CRERWTNHVR PGIKKEHIWT EADDIMLIDA HKVHGNRWSS IARCLPGRSE NAVKNHWNAT  240
KRSLKSKRRF KKKTSQQAAP GQFTLLEEYI RDKMMADENV APPSPSAGVA YDGQIVPCAA  300
AMLAVSSPHG MGQYLHPANA AGSSSQAGMM NLSVPLPDLN AYSGEMLERY YYPTYSNNLL  360
PYGPEPAFPQ MFSAQGRMHA ACTNLNLFPL PQHPGGGYYG SETGRSSAGG SSDQDEDVAQ  420
MASREFQTSE DEATLDLTGF N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	2e-33	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG052980.1