PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG057890.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MIKC_MADS

Protein Properties

Length: 248aa MW: 28080.8 Da PI: 7.081

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG057890.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	93.9	7.5e-30	48	98	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+snrqvtfskR+ngilKKA+E+SvLCdaev v++fss gkly+++s TRIDC3AG057890.1 48 KRIENQSNRQVTFSKRKNGILKKAKEISVLCDAEVGVVVFSSAGKLYDFCS 98 79***********************************************96 PP
2	K-box	72.6	1.2e-24	110	202	1	93
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 yq++sgk l+++k++s + e++++kke++n+q e+Rhl+GedL+sL+ keL +e++L+++l++ +k++e++ + +++ ++ e+e++ + TRIDC3AG057890.1 110 YQTNSGKILWDEKHKSFSAEIDRIKKENDNMQIELRHLKGEDLNSLQPKELIMIEEALDNGLTSLHEKQMEHYDRLMKHGKMLEDENKLLAFK 202 79999999******************************************************************9999999999998876655 PP

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence
LTSVPTTAIP QSHHARTGPQ STRGNEPFLA PPEDEGGGGM GRGKIEIKRI ENQSNRQVTF 60 SKRKNGILKK AKEISVLCDA EVGVVVFSSA GKLYDFCSPK TSLSRILEKY QTNSGKILWD 120 EKHKSFSAEI DRIKKENDNM QIELRHLKGE DLNSLQPKEL IMIEEALDNG LTSLHEKQME 180 HYDRLMKHGK MLEDENKLLA FKVHQYDIAL SGSMRDLELG YHPDRDFAAQ MPITFRVQPS 240 HPNLQEDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G20240.1	7e-64	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG057890.1