PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG058620.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 618aa MW: 69833.2 Da PI: 9.4212

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG058620.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.6	0.00088	500	522	1	21
EEET..TTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHir 21 y+C+ C++sF +k +L H r TRIDC3AG058620.3 500 YTCTidGCSMSFDTKKELSLHER 522 99*******************98 PP
2	zf-C2H2	13.8	0.00018	525	547	3	23
ET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirtH 23 Cp Cgk F ++ +L +H ++H TRIDC3AG058620.3 525 CPveGCGKKFFTHKYLLQHRKVH 547 9999*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence
MHLFINLMRF ELVASSLMLH LLGMTGQWLI VIVLEYVNAV IVQKHIILAS TLVTSRIKFR 60 PVVLEVLMIL ILGSESIIDL FVMVCTEYLK IEAEARSLAA EMEVEHGWKD IHFREANMED 120 RKMIEELLQD EESIPTSSDW AVKLGTNLYY SANLAKSPLH NKQIPYNRVI YRAFGCSSPD 180 NSPVKRENCE GSQDRQKKVV LAGRWCGKAW MSNQVHPFLA QRIESSEAKE ADKSSGVQAS 240 KRNSGTITDV PKSSKKRGNM AVEVTIDTKR PRLAEGHSSK PLKGIADVSH PSPAAVVPRV 300 SSRIADRANR LKSDMTEEDD GHACRPKPKA TSHSRTRPPK KIEVEAKKQM NMSKGDSKMM 360 APTAAKDDEE HPSATKGGPS VGPATKLEFS QRKHRTRTKT MKLLKKATGE ERTPRDHPMH 420 VEGYTCSIEG CSMSFDTRNE LSLHELDICP VKGCGKKFFT HKFLLQHHKV HTETTKQLKK 480 ATGEERAPTP RDHPMRVEGY TCTIDGCSMS FDTKKELSLH ERDICPVEGC GKKFFTHKYL 540 LQHRKVHTDD RPLKCPWEGC DVAFKWAWAR TEHLRVHTGD RPYVCCEPGC AETFRFVSDS 600 SRHKRETGHS TKQTKTKT

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence

MHLFINLMRF ELVASSLMLH LLGMTGQWLI VIVLEYVNAV IVQKHIILAS TLVTSRIKFR  60
PVVLEVLMIL ILGSESIIDL FVMVCTEYLK IEAEARSLAA EMEVEHGWKD IHFREANMED  120
RKMIEELLQD EESIPTSSDW AVKLGTNLYY SANLAKSPLH NKQIPYNRVI YRAFGCSSPD  180
NSPVKRENCE GSQDRQKKVV LAGRWCGKAW MSNQVHPFLA QRIESSEAKE ADKSSGVQAS  240
KRNSGTITDV PKSSKKRGNM AVEVTIDTKR PRLAEGHSSK PLKGIADVSH PSPAAVVPRV  300
SSRIADRANR LKSDMTEEDD GHACRPKPKA TSHSRTRPPK KIEVEAKKQM NMSKGDSKMM  360
APTAAKDDEE HPSATKGGPS VGPATKLEFS QRKHRTRTKT MKLLKKATGE ERTPRDHPMH  420
VEGYTCSIEG CSMSFDTRNE LSLHELDICP VKGCGKKFFT HKFLLQHHKV HTETTKQLKK  480
ATGEERAPTP RDHPMRVEGY TCTIDGCSMS FDTKKELSLH ERDICPVEGC GKKFFTHKYL  540
LQHRKVHTDD RPLKCPWEGC DVAFKWAWAR TEHLRVHTGD RPYVCCEPGC AETFRFVSDS  600
SRHKRETGHS TKQTKTKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	5e-57	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG058620.3