PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG060020.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 325aa MW: 35944.7 Da PI: 9.043

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG060020.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.6	1.8e-12	11	35	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ TRIDC3AG060020.2 11 QPECQYYLKTGTCKFGPTCKFHHPR 35 799********************96 PP
2	zf-CCCH	38.7	1.7e-12	57	81	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ TRIDC3AG060020.2 57 ERECAYYLKTGQCKYGNTCKFNHPE 81 799********************96 PP
3	zf-CCCH	35.1	2.2e-11	218	243	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ TRIDC3AG060020.2 218 DQPECIYYIKTGDCKFGAVCKFHHPR 243 689*********************96 PP
4	zf-CCCH	42.2	1.4e-13	263	289	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G +CkF H++ TRIDC3AG060020.2 263 PGEELCKFYSRYGICKFGVNCKFDHPM 289 689**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence
MKGEYPERVG QPECQYYLKT GTCKFGPTCK FHHPREKAGI AGMVQLNTLG YPLRPNEREC 60 AYYLKTGQCK YGNTCKFNHP EIFNAVASSR GSPIYPPVHN SGSTGPHSYT GTMASWTYPR 120 GSFIPSPRWQ SPSNYTPMIV PQGLVQVPSW NSYPGQMVPV SSPESRLQSP GAQQYYGTSR 180 QGEASAGNQG MQSSYRSSSF PAPQYALQRE NVFPERPDQP ECIYYIKTGD CKFGAVCKFH 240 HPRVRSQPPP DCILSPMGLP LRPGEELCKF YSRYGICKFG VNCKFDHPMA APMGVYAYGY 300 SASASPNAPM ARRLLESPSG SAYAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-112	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG060020.2