PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG060020.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 316aa MW: 34946.6 Da PI: 9.1387

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG060020.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.6	1.8e-12	16	40	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ TRIDC3AG060020.3 16 QPECQYYLKTGTCKFGPTCKFHHPR 40 799********************96 PP
2	zf-CCCH	38.7	1.6e-12	62	86	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ TRIDC3AG060020.3 62 ERECAYYLKTGQCKYGNTCKFNHPE 86 799********************96 PP
3	zf-CCCH	35.1	2.2e-11	209	234	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ TRIDC3AG060020.3 209 DQPECIYYIKTGDCKFGAVCKFHHPR 234 689*********************96 PP
4	zf-CCCH	42.2	1.3e-13	254	280	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G +CkF H++ TRIDC3AG060020.3 254 PGEELCKFYSRYGICKFGVNCKFDHPM 280 689**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence
IASARMKGEY PERVGQPECQ YYLKTGTCKF GPTCKFHHPR EKAGIAGMVQ LNTLGYPLRP 60 NERECAYYLK TGQCKYGNTC KFNHPEIFNA VASSRGSPIY PPVHNSGSTG PHSYTGTMAS 120 WTYPRGSFIP SPRWQSPSNY TPMIVPQGLV QVPSWNSYPS PGAQQYYGTS RQGEASAGNQ 180 GMQSSYRSSS FPAPQYALQR ENVFPERPDQ PECIYYIKTG DCKFGAVCKF HHPRVRSQPP 240 PDCILSPMGL PLRPGEELCK FYSRYGICKF GVNCKFDHPM AAPMGVYAYG YSASASPNAP 300 MARRLLESPS GSAYAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-112	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG060020.3