PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG060020.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 419aa MW: 46527.8 Da PI: 9.3841

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG060020.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.7	1.2e-10	58	84	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H++ TRIDC3AG060020.4 58 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 84 5789*********************97 PP
2	zf-CCCH	38.1	2.5e-12	105	129	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ TRIDC3AG060020.4 105 QPECQYYLKTGTCKFGPTCKFHHPR 129 799********************96 PP
3	zf-CCCH	38.2	2.3e-12	151	175	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ TRIDC3AG060020.4 151 ERECAYYLKTGQCKYGNTCKFNHPE 175 799********************96 PP
4	zf-CCCH	34.7	3.1e-11	312	337	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ TRIDC3AG060020.4 312 DQPECIYYIKTGDCKFGAVCKFHHPR 337 689*********************96 PP
5	zf-CCCH	41.7	1.9e-13	357	383	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G +CkF H++ TRIDC3AG060020.4 357 PGEELCKFYSRYGICKFGVNCKFDHPM 383 689**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence
RVRHPSSKLF PSGMVINTGV RGQTHHQKIQ DMKVEGMWQQ MAMSSSATMQ SGPYPVRPGE 60 PDCTYYLRTG LCRFGMSCRF NHPQDRNTAI ASARMKGEYP ERVGQPECQY YLKTGTCKFG 120 PTCKFHHPRE KAGIAGMVQL NTLGYPLRPN ERECAYYLKT GQCKYGNTCK FNHPEIFNAV 180 ASSRGSPIYP PVHNSGSTGP HSYTGTMASW TYPRGSFIPS PRWQSPSNYT PMIVPQGLVQ 240 VPSWNSYPGQ MVPVSSPESR LQSPGAQQYY GTSRQGEASA GNQGMQSSYR SSSFPAPQYA 300 LQRENVFPER PDQPECIYYI KTGDCKFGAV CKFHHPRVRS QPPPDCILSP MGLPLRPGEE 360 LCKFYSRYGI CKFGVNCKFD HPMAAPMGVY AYGYSASASP NAPMARRLLE SPSGSAYAS

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence

RVRHPSSKLF PSGMVINTGV RGQTHHQKIQ DMKVEGMWQQ MAMSSSATMQ SGPYPVRPGE  60
PDCTYYLRTG LCRFGMSCRF NHPQDRNTAI ASARMKGEYP ERVGQPECQY YLKTGTCKFG  120
PTCKFHHPRE KAGIAGMVQL NTLGYPLRPN ERECAYYLKT GQCKYGNTCK FNHPEIFNAV  180
ASSRGSPIYP PVHNSGSTGP HSYTGTMASW TYPRGSFIPS PRWQSPSNYT PMIVPQGLVQ  240
VPSWNSYPGQ MVPVSSPESR LQSPGAQQYY GTSRQGEASA GNQGMQSSYR SSSFPAPQYA  300
LQRENVFPER PDQPECIYYI KTGDCKFGAV CKFHHPRVRS QPPPDCILSP MGLPLRPGEE  360
LCKFYSRYGI CKFGVNCKFD HPMAAPMGVY AYGYSASASP NAPMARRLLE SPSGSAYAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-139	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG060020.4