PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG060020.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 385aa MW: 42843.5 Da PI: 9.1742

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG060020.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.9	1.1e-10	34	60	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H++ TRIDC3AG060020.5 34 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 60 5789*********************97 PP
2	zf-CCCH	38.3	2.3e-12	81	105	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ TRIDC3AG060020.5 81 QPECQYYLKTGTCKFGPTCKFHHPR 105 799********************96 PP
3	zf-CCCH	38.4	2.1e-12	127	151	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ TRIDC3AG060020.5 127 ERECAYYLKTGQCKYGNTCKFNHPE 151 799********************96 PP
4	zf-CCCH	34.8	2.8e-11	278	303	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ TRIDC3AG060020.5 278 DQPECIYYIKTGDCKFGAVCKFHHPR 303 689*********************96 PP
5	zf-CCCH	41.9	1.7e-13	323	349	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G +CkF H++ TRIDC3AG060020.5 323 PGEELCKFYSRYGICKFGVNCKFDHPM 349 689**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
FSRFVCVRNA EGMWQQMAMS SSATMQSGPY PVRPGEPDCT YYLRTGLCRF GMSCRFNHPQ 60 DRNTAIASAR MKGEYPERVG QPECQYYLKT GTCKFGPTCK FHHPREKAGI AGMVQLNTLG 120 YPLRPNEREC AYYLKTGQCK YGNTCKFNHP EIFNAVASSR GSPIYPPVHN SGSTGPHSYT 180 GTMASWTYPR GSFIPSPRWQ SPSNYTPMIV PQGLVQVPSW NSYPSRLQSP GAQQYYGTSR 240 QGEASAGNQG MQSSYRSSSF PAPQYALQRE NVFPERPDQP ECIYYIKTGD CKFGAVCKFH 300 HPRVRSQPPP DCILSPMGLP LRPGEELCKF YSRYGICKFG VNCKFDHPMA APMGVYAYGY 360 SASASPNAPM ARRLLESPSG SAYAS

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

FSRFVCVRNA EGMWQQMAMS SSATMQSGPY PVRPGEPDCT YYLRTGLCRF GMSCRFNHPQ  60
DRNTAIASAR MKGEYPERVG QPECQYYLKT GTCKFGPTCK FHHPREKAGI AGMVQLNTLG  120
YPLRPNEREC AYYLKTGQCK YGNTCKFNHP EIFNAVASSR GSPIYPPVHN SGSTGPHSYT  180
GTMASWTYPR GSFIPSPRWQ SPSNYTPMIV PQGLVQVPSW NSYPSRLQSP GAQQYYGTSR  240
QGEASAGNQG MQSSYRSSSF PAPQYALQRE NVFPERPDQP ECIYYIKTGD CKFGAVCKFH  300
HPRVRSQPPP DCILSPMGLP LRPGEELCKF YSRYGICKFG VNCKFDHPMA APMGVYAYGY  360
SASASPNAPM ARRLLESPSG SAYAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-138	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG060020.5