PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3AG060020.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 398aa MW: 43930.7 Da PI: 9.015

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3AG060020.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.8	1.2e-10	37	63	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H++ TRIDC3AG060020.6 37 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 63 5789*********************97 PP
2	zf-CCCH	38.2	2.4e-12	84	108	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ TRIDC3AG060020.6 84 QPECQYYLKTGTCKFGPTCKFHHPR 108 799********************96 PP
3	zf-CCCH	38.3	2.2e-12	130	154	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ TRIDC3AG060020.6 130 ERECAYYLKTGQCKYGNTCKFNHPE 154 799********************96 PP
4	zf-CCCH	34.7	2.9e-11	291	316	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ TRIDC3AG060020.6 291 DQPECIYYIKTGDCKFGAVCKFHHPR 316 689*********************96 PP
5	zf-CCCH	41.8	1.8e-13	336	362	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G +CkF H++ TRIDC3AG060020.6 336 PGEELCKFYSRYGICKFGVNCKFDHPM 362 689**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
VSAISCGISG RSHEGMWQQM AMSSSATMQS GPYPVRPGEP DCTYYLRTGL CRFGMSCRFN 60 HPQDRNTAIA SARMKGEYPE RVGQPECQYY LKTGTCKFGP TCKFHHPREK AGIAGMVQLN 120 TLGYPLRPNE RECAYYLKTG QCKYGNTCKF NHPEIFNAVA SSRGSPIYPP VHNSGSTGPH 180 SYTGTMASWT YPRGSFIPSP RWQSPSNYTP MIVPQGLVQV PSWNSYPGQM VPVSSPESRL 240 QSPGAQQYYG TSRQGEASAG NQGMQSSYRS SSFPAPQYAL QRENVFPERP DQPECIYYIK 300 TGDCKFGAVC KFHHPRVRSQ PPPDCILSPM GLPLRPGEEL CKFYSRYGIC KFGVNCKFDH 360 PMAAPMGVYA YGYSASASPN APMARRLLES PSGSAYAS

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

VSAISCGISG RSHEGMWQQM AMSSSATMQS GPYPVRPGEP DCTYYLRTGL CRFGMSCRFN  60
HPQDRNTAIA SARMKGEYPE RVGQPECQYY LKTGTCKFGP TCKFHHPREK AGIAGMVQLN  120
TLGYPLRPNE RECAYYLKTG QCKYGNTCKF NHPEIFNAVA SSRGSPIYPP VHNSGSTGPH  180
SYTGTMASWT YPRGSFIPSP RWQSPSNYTP MIVPQGLVQV PSWNSYPGQM VPVSSPESRL  240
QSPGAQQYYG TSRQGEASAG NQGMQSSYRS SSFPAPQYAL QRENVFPERP DQPECIYYIK  300
TGDCKFGAVC KFHHPRVRSQ PPPDCILSPM GLPLRPGEEL CKFYSRYGIC KFGVNCKFDH  360
PMAAPMGVYA YGYSASASPN APMARRLLES PSGSAYAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-139	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3AG060020.6