PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3AG061490.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family M-type_MADS
Protein Properties Length: 113aa    MW: 13292.3 Da    PI: 11.9862
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3AG061490.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.76.2e-2860109251
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF   2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                       rie+ +nrqv fskRr g++KKA+ELS LCda+va+++fs+ gklyeyss
  TRIDC3AG061490.2  60 RIEDRTNRQVCFSKRRSGLFKKAFELSLLCDADVALLVFSPAGKLYEYSS 109
                       8***********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    
SSPPRWPEPE FPSLPAPRPP HSPTPTNQEA RKERGERRRR RRRLLSRRKM ARRGRVELRR  60
IEDRTNRQVC FSKRRSGLFK KAFELSLLCD ADVALLVFSP AGKLYEYSSS RCT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13144RKERGERRRRRRRL
23443RGERRRRRRR
33644ERRRRRRRL
43742RRRRRR
53743RRRRRRR
63747RRRRRRRLLSR
73843RRRRRR
83848RRRRRRRLLSR
93949RRRRRRRLLSR
104050RRRRRRRLLSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.12e-24MIKC_MADS family protein