PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3BG008380.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 351aa    MW: 38217.2 Da    PI: 10.1446
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3BG008380.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.82.1e-1156104155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s++kGV   + +grW ++I++      r +r++lg+f   + Aa+a++ a+++++g
  TRIDC3BG008380.2  56 SRFKGVVPQP-NGRWGSQIYE------RhARVWLGTFPDQDLAARAYDVAALRYRG 104
                       689***9788.8********9......44*************************98 PP
2B394.28.8e-30170268189
                       EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                       f+k+ tpsdv+k++rlv+pk++ae+h            + +++ l +ed +g++W+++++y+++s++yvltkGW++Fv+++gL +gD++vF+ 
  TRIDC3BG008380.2 170 FEKAVTPSDVGKLNRLVVPKQHAEKHfplkrtqerTTTTGNGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLAAGDSIVFSC 262
                       89*************************99887766444448999***********************************************96 PP

                       -SS.SE CS
                B3  85 dgr.se 89 
                       +   +e
  TRIDC3BG008380.2 263 SAYgQE 268
                       654334 PP
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    
MGVEILSSMV EDSSQYSSGA STATTESGTT GRALTALSLP VAIADESVTS AQSASSRFKG  60
VVPQPNGRWG SQIYERHARV WLGTFPDQDL AARAYDVAAL RYRGRDAATN FPCAAAEAEL  120
AFLGAHSKAE IVDMLRKHTY ADELRQGLRR GRGMGARAQP TPSWAREPLF EKAVTPSDVG  180
KLNRLVVPKQ HAEKHFPLKR TQERTTTTGN GVLLNFEDGE GKVWRFRYSY WNSSQSYVLT  240
KGWSRFVREK GLAAGDSIVF SCSAYGQEKQ LFIDCKKNTT VNSGKSASPL PVVETAKGEQ  300
VRVVRLFGVD IAGVKRGRAA TAEQGPPELL KRQCVPLPHG QRSPALGAFV L
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.27e-96RAV family protein