PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG022340.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MIKC_MADS

Protein Properties

Length: 205aa MW: 23095.1 Da PI: 9.9726

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG022340.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	100.3	7.5e-32	49	99	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ TRIDC3BG022340.3 49 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 99 79***********************************************95 PP
2	K-box	81.7	1.7e-27	117	198	4	85
K-box 4 ssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 s++ ++e +a+++qqe++kL+++i++Lq+++R l+ +++++++l++L+qLe +Lek++ kiR++Knel+++++e++qk+ + TRIDC3BG022340.3 117 SNS-GtVAEVNAQYYQQESSKLRQQISSLQNSNRSLVRDSVSTMTLRDLKQLEGRLEKGIAKIRARKNELMYAEVEYMQKRVN 198 233.25999***********************************************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence
NNRWIASFAD LSCGASGVTA NDHQLAAPAP EDSAVAGSEK MGRGRIEIKR IENTTNRQVT 60 FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN SVKATIERYK KANSDTSNSG 120 TVAEVNAQYY QQESSKLRQQ ISSLQNSNRS LVRDSVSTMT LRDLKQLEGR LEKGIAKIRA 180 RKNELMYAEV EYMQKRVNTT YAFLY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	4e-89	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG022340.3