PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG028190.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 368aa MW: 39597 Da PI: 8.8228

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG028190.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	30.3	7.1e-10	7	27	7	27
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 r+++++GtCk+G++Ck++H++ TRIDC3BG028190.3 7 RYYMKNGTCKFGSNCKYNHPR 27 79*****************96 PP
2	zf-CCCH	35.2	2e-11	48	72	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++ +tG+Ck+G++CkF+H++ TRIDC3BG028190.3 48 EKECSYYIKTGHCKFGSTCKFHHPE 72 689********************96 PP
3	zf-CCCH	38.8	1.6e-12	202	228	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tGtCk+G++Ck++H++ TRIDC3BG028190.3 202 PGQPECHHYMKTGTCKFGSTCKYNHPQ 228 5789*********************97 PP
4	zf-CCCH	25.7	1.9e-08	251	273	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +C ++++ G+Ck+G+ CkF H+ TRIDC3BG028190.3 251 QPCLYYSQHGFCKFGPGCKFDHP 273 69********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
QVSHRVRYYM KNGTCKFGSN CKYNHPREGG SVQPVVLNSC GYPLRLGEKE CSYYIKTGHC 60 KFGSTCKFHH PEGPEHGVVS ETPNMYPPVQ QLPVSSPLPY PPLASWQLGR PSVLPGSFFP 120 GSYPPMMHPS AVMPMQGWNP YMPPINQVAS AGGQQTVQAG SLYGLSHQGP PSAVAYGSNY 180 ASLSSSTWPS IDKQEVVFPE RPGQPECHHY MKTGTCKFGS TCKYNHPQYL STPRSNYMLS 240 PLGLPIRPGA QPCLYYSQHG FCKFGPGCKF DHPLGALSYS PSASSLGDVP IAPYPLSLPV 300 APMAPSPSSS GLRPDYILAK DSSANQPASP GTTFGNAGQL SKIYAPHMLL RPPTSATGAT 360 VTIHGGEF

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

QVSHRVRYYM KNGTCKFGSN CKYNHPREGG SVQPVVLNSC GYPLRLGEKE CSYYIKTGHC  60
KFGSTCKFHH PEGPEHGVVS ETPNMYPPVQ QLPVSSPLPY PPLASWQLGR PSVLPGSFFP  120
GSYPPMMHPS AVMPMQGWNP YMPPINQVAS AGGQQTVQAG SLYGLSHQGP PSAVAYGSNY  180
ASLSSSTWPS IDKQEVVFPE RPGQPECHHY MKTGTCKFGS TCKYNHPQYL STPRSNYMLS  240
PLGLPIRPGA QPCLYYSQHG FCKFGPGCKF DHPLGALSYS PSASSLGDVP IAPYPLSLPV  300
APMAPSPSSS GLRPDYILAK DSSANQPASP GTTFGNAGQL SKIYAPHMLL RPPTSATGAT  360
VTIHGGEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	2e-89	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG028190.3