PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG028340.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 416aa MW: 44796.3 Da PI: 8.3136

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG028340.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.4	3.7e-11	2	26	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C +++rtG C +GdrC+++H++ TRIDC3BG028340.1 2 QADCIYYLRTGACGFGDRCRYNHPR 26 579********************96 PP
2	zf-CCCH	39.9	6.9e-13	51	75	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCk+G++Ck++H++ TRIDC3BG028340.1 51 QPVCEYYMKTGTCKFGSNCKYHHPK 75 789********************96 PP
3	zf-CCCH	40.1	6.2e-13	95	120	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++CkF+H++ TRIDC3BG028340.1 95 GEKECSYYMKTGQCKFGSTCKFHHPE 120 7899********************96 PP
4	zf-CCCH	38.6	1.7e-12	248	274	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++Ck++H++ TRIDC3BG028340.1 248 PGQPECQYYMRTGDCKFGATCKYHHPR 274 5789*********************96 PP
5	zf-CCCH	34.2	4.3e-11	297	320	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+++a++G+C+yG Ck+ H++ TRIDC3BG028340.1 297 QPCSYYAQNGYCRYGVACKYDHPM 320 69********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
DQADCIYYLR TGACGFGDRC RYNHPRDRGG TEFGGGAKNA VALDYPERLG QPVCEYYMKT 60 GTCKFGSNCK YHHPKQDGSV QPVMLNSNGF PLRPGEKECS YYMKTGQCKF GSTCKFHHPE 120 FGGIPVTPGI YPPLQSSTVP SPHPYAPLTN WQMGRPPVVP GSYMPGSYTP MMLSSGMIPL 180 QGWSPYPASV NPVASGGAQQ TVQAGPMYGI GHHGSSSTIA YGGPYMPYSS STIQSSNNQQ 240 EHGFPERPGQ PECQYYMRTG DCKFGATCKY HHPRDWSSPK SNYMFSPFCL PLRPGAQPCS 300 YYAQNGYCRY GVACKYDHPM GTLGYSSSPF PLSDVPIAPY PLGFSIATLA PSSSSQDLRP 360 EYISAKDPSV NQVGSPVAAS EPSGSILPKG VFPPDTVMRA QANTTTGGSS SPGGGR

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

DQADCIYYLR TGACGFGDRC RYNHPRDRGG TEFGGGAKNA VALDYPERLG QPVCEYYMKT  60
GTCKFGSNCK YHHPKQDGSV QPVMLNSNGF PLRPGEKECS YYMKTGQCKF GSTCKFHHPE  120
FGGIPVTPGI YPPLQSSTVP SPHPYAPLTN WQMGRPPVVP GSYMPGSYTP MMLSSGMIPL  180
QGWSPYPASV NPVASGGAQQ TVQAGPMYGI GHHGSSSTIA YGGPYMPYSS STIQSSNNQQ  240
EHGFPERPGQ PECQYYMRTG DCKFGATCKY HHPRDWSSPK SNYMFSPFCL PLRPGAQPCS  300
YYAQNGYCRY GVACKYDHPM GTLGYSSSPF PLSDVPIAPY PLGFSIATLA PSSSSQDLRP  360
EYISAKDPSV NQVGSPVAAS EPSGSILPKG VFPPDTVMRA QANTTTGGSS SPGGGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-119	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG028340.1