PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG028340.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 470aa MW: 49924.8 Da PI: 7.5969

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG028340.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	35.2	2e-11	55	80	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG C +GdrC+++H++ TRIDC3BG028340.4 55 DQADCIYYLRTGACGFGDRCRYNHPR 80 6789********************96 PP
2	zf-CCCH	39.7	8e-13	105	129	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCk+G++Ck++H++ TRIDC3BG028340.4 105 QPVCEYYMKTGTCKFGSNCKYHHPK 129 789********************96 PP
3	zf-CCCH	39.9	7.2e-13	149	174	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++++tG+Ck+G++CkF+H++ TRIDC3BG028340.4 149 GEKECSYYMKTGQCKFGSTCKFHHPE 174 7899********************96 PP
4	zf-CCCH	38.4	2e-12	302	328	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++Ck++H++ TRIDC3BG028340.4 302 PGQPECQYYMRTGDCKFGATCKYHHPR 328 5789*********************96 PP
5	zf-CCCH	34	4.9e-11	351	374	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 +C+++a++G+C+yG Ck+ H++ TRIDC3BG028340.4 351 QPCSYYAQNGYCRYGVACKYDHPM 374 69********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MEPHPAAAAG GGGGEGEAGR GADPDTGLEG SMWRMGLAGD GGGEGDGARL PERPDQADCI 60 YYLRTGACGF GDRCRYNHPR DRGGTEFGGG AKNAVALDYP ERLGQPVCEY YMKTGTCKFG 120 SNCKYHHPKQ DGSVQPVMLN SNGFPLRPGE KECSYYMKTG QCKFGSTCKF HHPEFGGIPV 180 TPGIYPPLQS STVPSPHPYA PLTNWQMGRP PVVPGSYMPG SYTPMMLSSG MIPLQGWSPY 240 PASVNPVASG GAQQTVQAGP MYGIGHHGSS STIAYGGPYM PYSSSTIQSS NNQQEHGFPE 300 RPGQPECQYY MRTGDCKFGA TCKYHHPRDW SSPKSNYMFS PFCLPLRPGA QPCSYYAQNG 360 YCRYGVACKY DHPMGTLGYS SSPFPLSDVP IAPYPLGFSI ATLAPSSSSQ DLRPEYISAK 420 DPSVNQVGSP VAASEPSGSI LPKGVFPPDT VMRAQANTTT GGSSSPGGGR

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MEPHPAAAAG GGGGEGEAGR GADPDTGLEG SMWRMGLAGD GGGEGDGARL PERPDQADCI  60
YYLRTGACGF GDRCRYNHPR DRGGTEFGGG AKNAVALDYP ERLGQPVCEY YMKTGTCKFG  120
SNCKYHHPKQ DGSVQPVMLN SNGFPLRPGE KECSYYMKTG QCKFGSTCKF HHPEFGGIPV  180
TPGIYPPLQS STVPSPHPYA PLTNWQMGRP PVVPGSYMPG SYTPMMLSSG MIPLQGWSPY  240
PASVNPVASG GAQQTVQAGP MYGIGHHGSS STIAYGGPYM PYSSSTIQSS NNQQEHGFPE  300
RPGQPECQYY MRTGDCKFGA TCKYHHPRDW SSPKSNYMFS PFCLPLRPGA QPCSYYAQNG  360
YCRYGVACKY DHPMGTLGYS SSPFPLSDVP IAPYPLGFSI ATLAPSSSSQ DLRPEYISAK  420
DPSVNQVGSP VAASEPSGSI LPKGVFPPDT VMRAQANTTT GGSSSPGGGR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-125	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG028340.4