PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3BG035340.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 297aa    MW: 33680.1 Da    PI: 8.6806
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3BG035340.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-0581101323
                       ETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                       C++Cgk F r  nL+ H r H
  TRIDC3BG035340.1  81 CEICGKGFQRDQNLQLHRRGH 101
                       *******************88 PP
2zf-C2H212.10.00059156178123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k +  +s+ k H + +
  TRIDC3BG035340.1 156 WKCDKCSKKYAVQSDWKAHSKIC 178
                       58*****************9876 PP
3zf-C2H212.50.00045186204523
                       TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                       dCg++Fsr++++ +H   +
  TRIDC3BG035340.1 186 DCGTVFSRRDSFITHRAFC 204
                       9**************8765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MYHHHLQQQQ QRGESEAAAS ADQDSSMSNL TTSASAFANP PPPPTPASNK RKRSLPGNPD  60
PESEVVALSP ATLMATNRFL CEICGKGFQR DQNLQLHRRG HNLPWKLKQR GSKEVVRKKV  120
YICPEASCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT  180
REYKCDCGTV FSRRDSFITH RAFCDALTEE SNKAISGGGL PLPPIAHAQH HAMLYSPHDL  240
MQQQHHHHHQ ELAAFQDQHH QVLQQHCNFD VKPEMQPWPT MPYDDVHHPL LQPLCSA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106119KLKQRGSKEVVRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-96C2H2 family protein