PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG035340.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 235aa MW: 26448.2 Da PI: 9.6647

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG035340.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.7e-05	81	101	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H TRIDC3BG035340.2 81 CEICGKGFQRDQNLQLHRRGH 101 *******************88 PP
2	zf-C2H2	12.5	0.00043	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + TRIDC3BG035340.2 156 WKCDKCSKKYAVQSDWKAHSKIC 178 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MYHHHLQQQQ QRGESEAAAS ADQDSSMSNL TTSASAFANP PPPPTPASNK RKRSLPGNPD 60 PESEVVALSP ATLMATNRFL CEICGKGFQR DQNLQLHRRG HNLPWKLKQR GSKEVVRKKV 120 YICPEASCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT 180 REYKCDCGTV FSRFLSVSSN LDPPLLLSTM HHESFLPCSL VDFSSLYILV SWRAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	119	KLKQRGSKEVVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	2e-83	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG035340.2