PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG035340.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 195aa MW: 21895.9 Da PI: 10.0866

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG035340.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.3	1.3e-05	81	101	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cgk F r nL+ H r H TRIDC3BG035340.3 81 CEICGKGFQRDQNLQLHRRGH 101 *******************88 PP
2	zf-C2H2	12.9	0.00034	156	178	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + TRIDC3BG035340.3 156 WKCDKCSKKYAVQSDWKAHSKIC 178 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence
MYHHHLQQQQ QRGESEAAAS ADQDSSMSNL TTSASAFANP PPPPTPASNK RKRSLPGNPD 60 PESEVVALSP ATLMATNRFL CEICGKGFQR DQNLQLHRRG HNLPWKLKQR GSKEVVRKKV 120 YICPEASCVH HDPSRALGDL TGIKKHFFRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT 180 REYKCDCGTV FSRPG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	119	KLKQRGSKEVVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G03840.1	3e-83	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG035340.3