PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG035480.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

bHLH

Protein Properties

Length: 354aa MW: 38554.5 Da PI: 6.8574

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG035480.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.5	5e-13	174	219	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f++Lr+llP++ K +K ++L+kA Y+k L+ TRIDC3BG035480.1 174 HMMSERKRREKLNDSFHTLRSLLPPC-----SKKDKTTVLTKAAGYLKTLE 219 7789*******************9.....699************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
VEGMADMDAS GFFVGGGDDR FMLPSSTTSS LSSKRSLSLD SGGSSGSGSF SLDLADASRY 60 QAPALPVPHN PLAGAVDHDD EAIMRAMMAV MSSSSASPSS SASSHPQPFR RERDSNMQQQ 120 SAAMAPQLRG GRSGHVMVKS SLSMSPERSS SGGRGQQQED PTRAASGNTG QLYHMMSERK 180 RREKLNDSFH TLRSLLPPCS KKDKTTVLTK AAGYLKTLEA QVSELEEKNN KLEKHIPTYD 240 CEEDVPHHQR RQRAKVQITK AASDEVVNLT VMVMVECDVV ELVLRILECL RWMEQVSVMS 300 VDADTYSPQV LLKAIASIKL RIVDNDWNQA LFHEAMTKAV NDATASRPPL VLTA

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

VEGMADMDAS GFFVGGGDDR FMLPSSTTSS LSSKRSLSLD SGGSSGSGSF SLDLADASRY  60
QAPALPVPHN PLAGAVDHDD EAIMRAMMAV MSSSSASPSS SASSHPQPFR RERDSNMQQQ  120
SAAMAPQLRG GRSGHVMVKS SLSMSPERSS SGGRGQQQED PTRAASGNTG QLYHMMSERK  180
RREKLNDSFH TLRSLLPPCS KKDKTTVLTK AAGYLKTLEA QVSELEEKNN KLEKHIPTYD  240
CEEDVPHHQR RQRAKVQITK AASDEVVNLT VMVMVECDVV ELVLRILECL RWMEQVSVMS  300
VDADTYSPQV LLKAIASIKL RIVDNDWNQA LFHEAMTKAV NDATASRPPL VLTA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	178	183	ERKRRE
2	179	184	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	7e-23	bHLH family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG035480.1