PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG037360.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LSD

Protein Properties

Length: 899aa MW: 94049.1 Da PI: 4.223

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG037360.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	35.1	2.2e-11	850	874	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr l++YPrGA +V+Ca C t+ TRIDC3BG037360.1 850 CGSCRELIAYPRGAVHVQCAACRTI 874 ***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 899 aa Download sequence
RLSVSPSQRP PPLTAPRPML SSPEIGPPSE NKPMISPPPF PSAPPPQETP QPTTADPLEP 60 AQSDHAESTP PSHPGLTATS PEACESTVSA PAHIDGKKRE AGRPPSLSAS PALEATKLEQ 120 HASPLPPPAA EAFPEAATTE ASPSPSHQIV AASVAETPSP STPSSPPAWT AGALSDGSLA 180 DSAAVVSEEA GRLPAALESM DANRPTAPAP PTLPVKSEPE GLLPQQHRRP PWPTVLPGCE 240 NFEHSQPPSP RPRQVEAAHG LPDAAQTNAI AVTSEEPGAP SVCKSDSEGS FEVAMHIPLS 300 SPTEAEPCSP DMAPPGFEKF KFLWPPLPPP NLSVETAHSL LNSAVPEGVA NPLPVLETMD 360 TKVVAARNLP LPSSESGAEE PLWQPLLRSP SPITQAEPCS PDMPPPGFEN FKLSCMPLSN 420 ENTYASSDVI ATKAVAVTPE EAVLSVPTLE AIDVETDSAC NLLPPLGSKL EGLLKQPLLR 480 STTPVAESPP CSPEIAPPGF ESFRLSWQPL STPPSGTAYI MPDAAVMPLP VTLEEAAGSP 540 PALEAMDVDM NAIHPLTVPL ESGVEGSLQE PQPRPPSPIS QDVPSSPDMA PPGFENFKSS 600 QLLLPSPVFS QTAFTLHDST TTIAEYVSEE AAQLSPALET IDVKMETSPE SGAEGSLPQQ 660 MHWRPSPKEN STACSPEMVP SGHENLQPLP YPAFLPQAQT PDVVATGAVI GALDQMHHPA 720 PVLGTIEEGT SPILSPPLES GSLPQLEPQM NSVTAHVVDT PMHVPATDCV AVNSEGPVLP 780 PPALQAMVTN MDSATTLLPR FENGAEGSLP QLRQQSSSPN VQAAPCSLDA VELLPPPPPP 840 FINKVGQMVC GSCRELIAYP RGAVHVQCAA CRTINLVVEA HEVGNVHCGR CEILLMYPF

Sequence ? help Back to Top

Protein Sequence Length: 899 aa Download sequence

RLSVSPSQRP PPLTAPRPML SSPEIGPPSE NKPMISPPPF PSAPPPQETP QPTTADPLEP  60
AQSDHAESTP PSHPGLTATS PEACESTVSA PAHIDGKKRE AGRPPSLSAS PALEATKLEQ  120
HASPLPPPAA EAFPEAATTE ASPSPSHQIV AASVAETPSP STPSSPPAWT AGALSDGSLA  180
DSAAVVSEEA GRLPAALESM DANRPTAPAP PTLPVKSEPE GLLPQQHRRP PWPTVLPGCE  240
NFEHSQPPSP RPRQVEAAHG LPDAAQTNAI AVTSEEPGAP SVCKSDSEGS FEVAMHIPLS  300
SPTEAEPCSP DMAPPGFEKF KFLWPPLPPP NLSVETAHSL LNSAVPEGVA NPLPVLETMD  360
TKVVAARNLP LPSSESGAEE PLWQPLLRSP SPITQAEPCS PDMPPPGFEN FKLSCMPLSN  420
ENTYASSDVI ATKAVAVTPE EAVLSVPTLE AIDVETDSAC NLLPPLGSKL EGLLKQPLLR  480
STTPVAESPP CSPEIAPPGF ESFRLSWQPL STPPSGTAYI MPDAAVMPLP VTLEEAAGSP  540
PALEAMDVDM NAIHPLTVPL ESGVEGSLQE PQPRPPSPIS QDVPSSPDMA PPGFENFKSS  600
QLLLPSPVFS QTAFTLHDST TTIAEYVSEE AAQLSPALET IDVKMETSPE SGAEGSLPQQ  660
MHWRPSPKEN STACSPEMVP SGHENLQPLP YPAFLPQAQT PDVVATGAVI GALDQMHHPA  720
PVLGTIEEGT SPILSPPLES GSLPQLEPQM NSVTAHVVDT PMHVPATDCV AVNSEGPVLP  780
PPALQAMVTN MDSATTLLPR FENGAEGSLP QLRQQSSSPN VQAAPCSLDA VELLPPPPPP  840
FINKVGQMVC GSCRELIAYP RGAVHVQCAA CRTINLVVEA HEVGNVHCGR CEILLMYPF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	9e-21	LSD family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG037360.1