PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3BG037700.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 503aa    MW: 54788.7 Da    PI: 8.384
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3BG037700.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.21.8e-10125150227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C f++rt tCky ++CkF H++
  TRIDC3BG037700.2 125 GEKECAFYMRTRTCKYEETCKFDHPQ 150
                       7899********************97 PP
2zf-CCCH36.86.3e-12174200127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C+ff +tG Ck+G++CkF+H++
  TRIDC3BG037700.2 174 PGEPNCPFFVKTGDCKFGSKCKFNHSK 200
                       5789*********************95 PP
3zf-CCCH25.52.3e-08248268425
                       ---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                       ++C+++a+ G Ck G +CkF+H
  TRIDC3BG037700.2 248 KPCPHYAK-GKCKLGTNCKFIH 268
                       59******.************* PP
4zf-CCCH26.11.5e-08322347126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ++++ C+f+ +tG C yG +C+F+H+
  TRIDC3BG037700.2 322 PGEVDCSFYIKTGSCMYGRTCRFNHP 347
                       57899********************8 PP
5zf-CCCH34.63.2e-11392416226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ++  C+f+ +tG+Ck+ +rCkF+H+
  TRIDC3BG037700.2 392 GETVCDFYKKTGFCKFSERCKFHHP 416
                       6789********************9 PP
6zf-CCCH38.81.6e-12449472427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                       e C ++++tG Ck+G +CkF H+p
  TRIDC3BG037700.2 449 EACAYYMKTGACKFGVQCKFDHPP 472
                       78********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    
MSGYPFHPYG RGGVGEDASA MSGYPFYPYG RGGVGDDAAA RYSSYEIDLI AARYAGDPSP  60
YPYPSASGGF DPHVGARRPA DVLYHQSIMG SHSTIGQSYA FYSPNTMVKR PRLESSLPIY  120
PQRPGEKECA FYMRTRTCKY EETCKFDHPQ WVPEGGIPNW KEGTKAGESY PERPGEPNCP  180
FFVKTGDCKF GSKCKFNHSK KKDDGTVAGP GDKESLFSGN STLPVKPSEP CPESLISGNS  240
TLPVKPSKPC PHYAKGKCKL GTNCKFIHAK DMEAPSSGGN ESENTATAEA AGHHGAAHDS  300
VSAKKSAPVA LEHNSKGMPI RPGEVDCSFY IKTGSCMYGR TCRFNHPGRH IQASVVPGEM  360
LNPAAKFLPS FDFRVTHVPI EPEPITYPQR PGETVCDFYK KTGFCKFSER CKFHHPVDRS  420
APDSIAKWEP SQQPVTLTVA GFPRREDAEA CAYYMKTGAC KFGVQCKFDH PPLGEAIAKV  480
SKHGEGKEGG KKKAVGLSYV LEN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-122C3H family protein