PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG037700.7

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 223aa MW: 24393.9 Da PI: 9.1315

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG037700.7	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.5	5.3e-09	42	67	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C+f+ +tG C yG +C+F+H+ TRIDC3BG037700.7 42 PGEVDCSFYIKTGSCMYGRTCRFNHP 67 57899********************8 PP
2	zf-CCCH	36.1	1.1e-11	112	136	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++ C+f+ +tG+Ck+ +rCkF+H+ TRIDC3BG037700.7 112 GETVCDFYKKTGFCKFSERCKFHHP 136 6789********************9 PP
3	zf-CCCH	40.2	5.6e-13	169	192	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 e C ++++tG Ck+G +CkF H+p TRIDC3BG037700.7 169 EACAYYMKTGACKFGVQCKFDHPP 192 78********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence
AKGKCKLGTN SGHHGAAHDS VSAKKSAPVA LEHNSKGMPI RPGEVDCSFY IKTGSCMYGR 60 TCRFNHPGRH IQASVVPGEM LNPAAKFLPS FDFRVTHVPI EPEPITYPQR PGETVCDFYK 120 KTGFCKFSER CKFHHPVDRS APDSIAKWEP SQQPVTLTVA GFPRREDAEA CAYYMKTGAC 180 KFGVQCKFDH PPLGEAIAKV SKHGEGKEGG KKKAVGLSYV LEN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-57	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG037700.7