PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3BG037700.9
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 239aa    MW: 26106.7 Da    PI: 8.427
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3BG037700.9genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.89e-091838425
                      ---SGGGGTS--TTTTT-SS-S CS
           zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                      ++C+++a+ G Ck G +CkF+H
  TRIDC3BG037700.9 18 KPCPHYAK-GKCKLGTNCKFIH 38
                      59******.************* PP
2zf-CCCH27.45.8e-0992117126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       ++++ C+f+ +tG C yG +C+F+H+
  TRIDC3BG037700.9  92 PGEVDCSFYIKTGSCMYGRTCRFNHP 117
                       57899********************8 PP
3zf-CCCH35.91.2e-11162186226
                       -S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                       ++  C+f+ +tG+Ck+ +rCkF+H+
  TRIDC3BG037700.9 162 GETVCDFYKKTGFCKFSERCKFHHP 186
                       6789********************9 PP
4zf-CCCH31.82.5e-10219238423
                       ---SGGGGTS--TTTTT-SS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkF 23 
                       e C ++++tG Ck+G +CkF
  TRIDC3BG037700.9 219 EACAYYMKTGACKFGVQCKF 238
                       78****************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    
PQESLISGNS TLPVKPSKPC PHYAKGKCKL GTNCKFIHAK DMEAPSSGGN ESENTATAEA  60
AGHHGAAHDS VSAKKSAPVA LEHNSKGMPI RPGEVDCSFY IKTGSCMYGR TCRFNHPGRH  120
IQASVVPGEM LNPAAKFLPS FDFRVTHVPI EPEPITYPQR PGETVCDFYK KTGFCKFSER  180
CKFHHPVDRS APDSIAKWEP SQQPVTLTVA GFPRREDAEA CAYYMKTGAC KFGVQCKFD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-60C3H family protein