PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC3BG044000.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 383aa    MW: 40273.3 Da    PI: 9.6354
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC3BG044000.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.72.1e-1173121155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s++kGV   + +grW A+I++      r +r++lg+f  + +Aa+a++ a+++++g
  TRIDC3BG044000.1  73 SRFKGVVPQP-NGRWGAQIYE------RhQRVWLGTFAGEADAARAYDVAAQRFRG 121
                       689***9788.8*********......44**********99*************98 PP
2B397.39.9e-31205298187
                       EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                       f+k+ tpsdv+k++rlv+pk++ae+h        g  + ++  l +ed  g++W+++++y+++s++yvltkGW++Fvk++gL +gD+v F+++
  TRIDC3BG044000.1 205 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpaaG-GESKGLLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLGAGDVVGFYRS 296
                       89*******************************53.456888*************************************************66 PP

                       SS CS
                B3  86 gr 87 
                         
  TRIDC3BG044000.1 297 AA 298
                       44 PP
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    
MDSTSCLADD TSSGGASTDK LKALAAAAAA AAGPLERMGS GASAVLDAAE PGSEADSGGA  60
GAGRAAAGKL PSSRFKGVVP QPNGRWGAQI YERHQRVWLG TFAGEADAAR AYDVAAQRFR  120
GRDAVTNFRP LADADPDAAA ELRFLAARSK AEVVDMLRKH TYFDELAQSK RAFAASAALS  180
APTTSRGADG HASTPSPAAA REHLFDKTVT PSDVGKLNRL VIPKQHAEKH FPLQLPAAGG  240
ESKGLLLNFE DAAGKVWRFR YSYWNSSQSY VLTKGWSRFV KEKGLGAGDV VGFYRSAAGS  300
TGEDTKLFID CKLRPDTNSP ASADPVDQSA PVQKAVRLFG VDLLTAPASP EQGMPGCKRA  360
RDLVKSPPPK VAFKKQCIEL ALA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-99RAV family protein