PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG065650.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 762aa MW: 85473.5 Da PI: 9.2806

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG065650.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.1	0.0012	644	666	1	21
EEET..TTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHir 21 y+C+ C++sF +k +L H r TRIDC3BG065650.4 644 YTCTieGCSMSFDTKKELSLHER 666 99*******************98 PP
2	zf-C2H2	13.2	0.00027	668	691	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk F ++ +L +H ++H TRIDC3BG065650.4 668 TCPvkGCGKKFFTHKYLLQHRKVH 691 79999*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 762 aa Download sequence
MSYDYNSIND QLVDSGGCHL ANAAGSEGTN GGILRPGFEL HGTEILPDAG PVTDSAPDLL 60 ASAYGNQPDT DEHNRNKKIK VSHDSSELDG TKIPSSSIKC QQRPSSQSSQ CIGGSSISNG 120 PRGVRTRNKY QLKMALSQGF QLKNNYWTME QKVQPEPTRS KETVKEPLDA SGADNDARCS 180 TAISVGGPRI STTTMDSLNK PIVKIDKDSA RMHVFCLEHA VEVEKQLQAI GGAHVILLCR 240 PEYLRIEAEA RSLAAELEVE HGWKDIHFRE ANMEDRKMIE ELQQDEESIP TSSDWAVKLG 300 TNLYYSANLA KSPLHNKQIP YNRVIYRAFG RSSPDNSPVK LENCEGSRDT QKKIVLAGRW 360 CGKAWMSNQV HPFLAQRIES SELEETDKSS GVEASKRNSS TITDVPKSSS KKRENMAVEV 420 TTDTKRPRLA KGYSSKALKG VAEVSHPSPT AVVPRVSSRI ADRANRLKSE MTEEPKATSH 480 SRTRPPKKFE VEAKKQMKMR KEDKMMAPTA PKDDEERPSA TKGGPSVGPA TKLEFSQRKR 540 RTRTDTMKQL KKATGEERTP RDHPMHVEGY TCSIEGCSMS FDTRNKLSLH ELDMCPVEGC 600 GKKFFTHKFL LQHGKIHIET TKQLKKATGE ERAPRDHRMR VEGYTCTIEG CSMSFDTKKE 660 LSLHERDTCP VKGCGKKFFT HKYLLQHRKV HTDDRPLKCP WEGCDVAFKW AWARTEHLRV 720 HTGDRPYVCR EPGCAETFRF ISDFSRHKRE TGHSTKQTKT KT

Sequence ? help Back to Top

Protein Sequence Length: 762 aa Download sequence

MSYDYNSIND QLVDSGGCHL ANAAGSEGTN GGILRPGFEL HGTEILPDAG PVTDSAPDLL  60
ASAYGNQPDT DEHNRNKKIK VSHDSSELDG TKIPSSSIKC QQRPSSQSSQ CIGGSSISNG  120
PRGVRTRNKY QLKMALSQGF QLKNNYWTME QKVQPEPTRS KETVKEPLDA SGADNDARCS  180
TAISVGGPRI STTTMDSLNK PIVKIDKDSA RMHVFCLEHA VEVEKQLQAI GGAHVILLCR  240
PEYLRIEAEA RSLAAELEVE HGWKDIHFRE ANMEDRKMIE ELQQDEESIP TSSDWAVKLG  300
TNLYYSANLA KSPLHNKQIP YNRVIYRAFG RSSPDNSPVK LENCEGSRDT QKKIVLAGRW  360
CGKAWMSNQV HPFLAQRIES SELEETDKSS GVEASKRNSS TITDVPKSSS KKRENMAVEV  420
TTDTKRPRLA KGYSSKALKG VAEVSHPSPT AVVPRVSSRI ADRANRLKSE MTEEPKATSH  480
SRTRPPKKFE VEAKKQMKMR KEDKMMAPTA PKDDEERPSA TKGGPSVGPA TKLEFSQRKR  540
RTRTDTMKQL KKATGEERTP RDHPMHVEGY TCSIEGCSMS FDTRNKLSLH ELDMCPVEGC  600
GKKFFTHKFL LQHGKIHIET TKQLKKATGE ERAPRDHRMR VEGYTCTIEG CSMSFDTKKE  660
LSLHERDTCP VKGCGKKFFT HKYLLQHRKV HTDDRPLKCP WEGCDVAFKW AWARTEHLRV  720
HTGDRPYVCR EPGCAETFRF ISDFSRHKRE TGHSTKQTKT KT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	537	542	QRKRRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	2e-57	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG065650.4