PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG065650.8

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C2H2

Protein Properties

Length: 490aa MW: 55891.6 Da PI: 10.0888

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG065650.8	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00073	372	394	1	21
EEET..TTTEEESSHHHHHHHHH CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHir 21 y+C+ C++sF +k +L H r TRIDC3BG065650.8 372 YTCTieGCSMSFDTKKELSLHER 394 99*******************98 PP
2	zf-C2H2	13.9	0.00016	396	419	2	23
EET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirtH 23 +Cp Cgk F ++ +L +H ++H TRIDC3BG065650.8 396 TCPvkGCGKKFFTHKYLLQHRKVH 419 79999*****************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MEDRKMIEEL QQDEESIPTS SDWAVKLGTN LYYSANLAKS PLHNKQIPYN RVIYRAFGRS 60 SPDNSPVKLE NCEGSRDTQK KIVLAGRWCG KAWMSNQVHP FLAQRIESSE LEETDKSSGV 120 EASKRNSSTI TDVPKSSSKK RENMAVEVTT DTKRPRLAKG YSSKALKGVA EVSHPSPTAV 180 VPRVSSRIAD RANRLKSEMT EEPKATSHSR TRPPKKFEVE AKKQMKMRKE DKMMAPTAPK 240 DDEERPSATK GGPSVGPATK LEFSQRKRRT RTDTMKQLKK ATGEERTPRD HPMHVEGYTC 300 SIEGCSMSFD TRNKLSLHEL DMCPVEGCGK KFFTHKFLLQ HGKIHIETTK QLKKATGEER 360 APRDHRMRVE GYTCTIEGCS MSFDTKKELS LHERDTCPVK GCGKKFFTHK YLLQHRKVHT 420 DDRPLKCPWE GCDVAFKWAW ARTEHLRVHT GDRPYVCREP GCAETFRFIS DFSRHKRETG 480 HSTKQTKTKT

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MEDRKMIEEL QQDEESIPTS SDWAVKLGTN LYYSANLAKS PLHNKQIPYN RVIYRAFGRS  60
SPDNSPVKLE NCEGSRDTQK KIVLAGRWCG KAWMSNQVHP FLAQRIESSE LEETDKSSGV  120
EASKRNSSTI TDVPKSSSKK RENMAVEVTT DTKRPRLAKG YSSKALKGVA EVSHPSPTAV  180
VPRVSSRIAD RANRLKSEMT EEPKATSHSR TRPPKKFEVE AKKQMKMRKE DKMMAPTAPK  240
DDEERPSATK GGPSVGPATK LEFSQRKRRT RTDTMKQLKK ATGEERTPRD HPMHVEGYTC  300
SIEGCSMSFD TRNKLSLHEL DMCPVEGCGK KFFTHKFLLQ HGKIHIETTK QLKKATGEER  360
APRDHRMRVE GYTCTIEGCS MSFDTKKELS LHERDTCPVK GCGKKFFTHK YLLQHRKVHT  420
DDRPLKCPWE GCDVAFKWAW ARTEHLRVHT GDRPYVCREP GCAETFRFIS DFSRHKRETG  480
HSTKQTKTKT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	265	270	QRKRRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48430.1	1e-59	C2H2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG065650.8