PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG067780.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 406aa MW: 45086.2 Da PI: 9.2362

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG067780.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.8	1.2e-10	45	71	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H++ TRIDC3BG067780.2 45 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 71 5789*********************97 PP
2	zf-CCCH	38.2	2.4e-12	92	116	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ TRIDC3BG067780.2 92 QPECQYYLKTGTCKFGPTCKFHHPR 116 799********************96 PP
3	zf-CCCH	38.3	2.2e-12	138	162	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ TRIDC3BG067780.2 138 ERECAYYLKTGQCKYGNTCKFNHPE 162 799********************96 PP
4	zf-CCCH	34.7	3e-11	299	324	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ TRIDC3BG067780.2 299 DQPECIYYIKTGDCKFGAVCKFHHPR 324 689*********************96 PP
5	zf-CCCH	41.8	1.8e-13	344	370	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G +CkF H++ TRIDC3BG067780.2 344 PGEELCKFYSRYGICKFGVNCKFDHPM 370 689**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 406 aa Download sequence
MVINTGVRGQ THHRKIQDMK VEGMWQQMAM SSGATMQSGP YPVRPGEPDC TYYLRTGLCR 60 FGMSCRFNHP QDRNTAIASA RMKGEYPERV GQPECQYYLK TGTCKFGPTC KFHHPREKAG 120 IAGMVQLNTL GYPLRPNERE CAYYLKTGQC KYGNTCKFNH PEIFSAVASS RGSPIYPPVH 180 NSGSTGPHSY TGTMASWTYP RGSFIPSPRW QSPSNYTPMI VPQGLVQVPN WNSYPGQMVP 240 VSSPESRLQS PGAQQYYGTS RQGEASAGNQ GMQSPYRSSS FPAPQYALQR ENVFPERPDQ 300 PECIYYIKTG DCKFGAVCKF HHPRVRSQPP PDCILSPMGL PLRPGEELCK FYSRYGICKF 360 GVNCKFDHPM AAPMGVYAYG YSASASPNAP MARRLLESPS GSAYAS

Sequence ? help Back to Top

Protein Sequence Length: 406 aa Download sequence

MVINTGVRGQ THHRKIQDMK VEGMWQQMAM SSGATMQSGP YPVRPGEPDC TYYLRTGLCR  60
FGMSCRFNHP QDRNTAIASA RMKGEYPERV GQPECQYYLK TGTCKFGPTC KFHHPREKAG  120
IAGMVQLNTL GYPLRPNERE CAYYLKTGQC KYGNTCKFNH PEIFSAVASS RGSPIYPPVH  180
NSGSTGPHSY TGTMASWTYP RGSFIPSPRW QSPSNYTPMI VPQGLVQVPN WNSYPGQMVP  240
VSSPESRLQS PGAQQYYGTS RQGEASAGNQ GMQSPYRSSS FPAPQYALQR ENVFPERPDQ  300
PECIYYIKTG DCKFGAVCKF HHPRVRSQPP PDCILSPMGL PLRPGEELCK FYSRYGICKF  360
GVNCKFDHPM AAPMGVYAYG YSASASPNAP MARRLLESPS GSAYAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-145	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG067780.2