PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG067780.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 391aa MW: 43293 Da PI: 9.0785

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG067780.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.9	1.1e-10	30	56	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H++ TRIDC3BG067780.5 30 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 56 5789*********************97 PP
2	zf-CCCH	38.2	2.3e-12	77	101	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ TRIDC3BG067780.5 77 QPECQYYLKTGTCKFGPTCKFHHPR 101 799********************96 PP
3	zf-CCCH	38.4	2.1e-12	123	147	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ TRIDC3BG067780.5 123 ERECAYYLKTGQCKYGNTCKFNHPE 147 799********************96 PP
4	zf-CCCH	34.8	2.8e-11	284	309	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ TRIDC3BG067780.5 284 DQPECIYYIKTGDCKFGAVCKFHHPR 309 689*********************96 PP
5	zf-CCCH	41.8	1.7e-13	329	355	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G +CkF H++ TRIDC3BG067780.5 329 PGEELCKFYSRYGICKFGVNCKFDHPM 355 689**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence
ISGRSHEGMW QQMAMSSGAT MQSGPYPVRP GEPDCTYYLR TGLCRFGMSC RFNHPQDRNT 60 AIASARMKGE YPERVGQPEC QYYLKTGTCK FGPTCKFHHP REKAGIAGMV QLNTLGYPLR 120 PNERECAYYL KTGQCKYGNT CKFNHPEIFS AVASSRGSPI YPPVHNSGST GPHSYTGTMA 180 SWTYPRGSFI PSPRWQSPSN YTPMIVPQGL VQVPNWNSYP GQMVPVSSPE SRLQSPGAQQ 240 YYGTSRQGEA SAGNQGMQSP YRSSSFPAPQ YALQRENVFP ERPDQPECIY YIKTGDCKFG 300 AVCKFHHPRV RSQPPPDCIL SPMGLPLRPG EELCKFYSRY GICKFGVNCK FDHPMAAPMG 360 VYAYGYSASA SPNAPMARRL LESPSGSAYA S

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence

ISGRSHEGMW QQMAMSSGAT MQSGPYPVRP GEPDCTYYLR TGLCRFGMSC RFNHPQDRNT  60
AIASARMKGE YPERVGQPEC QYYLKTGTCK FGPTCKFHHP REKAGIAGMV QLNTLGYPLR  120
PNERECAYYL KTGQCKYGNT CKFNHPEIFS AVASSRGSPI YPPVHNSGST GPHSYTGTMA  180
SWTYPRGSFI PSPRWQSPSN YTPMIVPQGL VQVPNWNSYP GQMVPVSSPE SRLQSPGAQQ  240
YYGTSRQGEA SAGNQGMQSP YRSSSFPAPQ YALQRENVFP ERPDQPECIY YIKTGDCKFG  300
AVCKFHHPRV RSQPPPDCIL SPMGLPLRPG EELCKFYSRY GICKFGVNCK FDHPMAAPMG  360
VYAYGYSASA SPNAPMARRL LESPSGSAYA S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-145	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG067780.5