PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG067780.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 388aa MW: 42958.7 Da PI: 9.0951

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG067780.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	32.9	1.1e-10	37	63	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C++G +C+F+H++ TRIDC3BG067780.6 37 PGEPDCTYYLRTGLCRFGMSCRFNHPQ 63 5789*********************97 PP
2	zf-CCCH	38.3	2.3e-12	84	108	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ TRIDC3BG067780.6 84 QPECQYYLKTGTCKFGPTCKFHHPR 108 799********************96 PP
3	zf-CCCH	38.4	2.1e-12	130	154	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ TRIDC3BG067780.6 130 ERECAYYLKTGQCKYGNTCKFNHPE 154 799********************96 PP
4	zf-CCCH	34.8	2.8e-11	281	306	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ TRIDC3BG067780.6 281 DQPECIYYIKTGDCKFGAVCKFHHPR 306 689*********************96 PP
5	zf-CCCH	41.8	1.7e-13	326	352	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++elC+f++r+G+Ck+G +CkF H++ TRIDC3BG067780.6 326 PGEELCKFYSRYGICKFGVNCKFDHPM 352 689**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence
VSAIFCGISG RSHEGMWQQM AMSSGATMQS GPYPVRPGEP DCTYYLRTGL CRFGMSCRFN 60 HPQDRNTAIA SARMKGEYPE RVGQPECQYY LKTGTCKFGP TCKFHHPREK AGIAGMVQLN 120 TLGYPLRPNE RECAYYLKTG QCKYGNTCKF NHPEIFSAVA SSRGSPIYPP VHNSGSTGPH 180 SYTGTMASWT YPRGSFIPSP RWQSPSNYTP MIVPQGLVQV PNWNSYPSRL QSPGAQQYYG 240 TSRQGEASAG NQGMQSPYRS SSFPAPQYAL QRENVFPERP DQPECIYYIK TGDCKFGAVC 300 KFHHPRVRSQ PPPDCILSPM GLPLRPGEEL CKFYSRYGIC KFGVNCKFDH PMAAPMGVYA 360 YGYSASASPN APMARRLLES PSGSAYAS

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence

VSAIFCGISG RSHEGMWQQM AMSSGATMQS GPYPVRPGEP DCTYYLRTGL CRFGMSCRFN  60
HPQDRNTAIA SARMKGEYPE RVGQPECQYY LKTGTCKFGP TCKFHHPREK AGIAGMVQLN  120
TLGYPLRPNE RECAYYLKTG QCKYGNTCKF NHPEIFSAVA SSRGSPIYPP VHNSGSTGPH  180
SYTGTMASWT YPRGSFIPSP RWQSPSNYTP MIVPQGLVQV PNWNSYPSRL QSPGAQQYYG  240
TSRQGEASAG NQGMQSPYRS SSFPAPQYAL QRENVFPERP DQPECIYYIK TGDCKFGAVC  300
KFHHPRVRSQ PPPDCILSPM GLPLRPGEEL CKFYSRYGIC KFGVNCKFDH PMAAPMGVYA  360
YGYSASASPN APMARRLLES PSGSAYAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-144	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG067780.6