PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC3BG067780.9

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 287aa MW: 32121.4 Da PI: 8.9728

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC3BG067780.9	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.8	1.6e-12	11	35	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ TRIDC3BG067780.9 11 QPECQYYLKTGTCKFGPTCKFHHPR 35 799********************96 PP
2	zf-CCCH	38.9	1.4e-12	57	81	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C ++++tG+CkyG++CkF+H++ TRIDC3BG067780.9 57 ERECAYYLKTGQCKYGNTCKFNHPE 81 799********************96 PP
3	zf-CCCH	35.3	1.9e-11	218	243	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG Ck+G+ CkF+H++ TRIDC3BG067780.9 218 DQPECIYYIKTGDCKFGAVCKFHHPR 243 689*********************96 PP
4	zf-CCCH	38.4	2.1e-12	263	287	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 +++elC+f++r+G+Ck+G +CkF H TRIDC3BG067780.9 263 PGEELCKFYSRYGICKFGVNCKFDH 287 689********************** PP

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence
MKGEYPERVG QPECQYYLKT GTCKFGPTCK FHHPREKAGI AGMVQLNTLG YPLRPNEREC 60 AYYLKTGQCK YGNTCKFNHP EIFSAVASSR GSPIYPPVHN SGSTGPHSYT GTMASWTYPR 120 GSFIPSPRWQ SPSNYTPMIV PQGLVQVPNW NSYPGQMVPV SSPESRLQSP GAQQYYGTSR 180 QGEASAGNQG MQSPYRSSSF PAPQYALQRE NVFPERPDQP ECIYYIKTGD CKFGAVCKFH 240 HPRVRSQPPP DCILSPMGLP LRPGEELCKF YSRYGICKFG VNCKFDH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-108	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC3BG067780.9