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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | TRIDC3BG070090.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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| Family | Trihelix | ||||||||
| Protein Properties | Length: 203aa MW: 23039.6 Da PI: 12.6498 | ||||||||
| Description | Trihelix family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | trihelix | 64.4 | 2.4e-20 | 30 | 99 | 1 | 72 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt 72
rWt++e+l+Li+a+r +e+r + +W+ vs+++r++g+er+p qC+++w nl+++ kki ++ekk +
TRIDC3BG070090.1 30 RWTRHETLVLIQAKRVTEQRAAQ--PVRLKWAVVSAYCRRHGVERGPMQCRKRWGNLSWDLKKIVAWEKKAR 99
8****************998655..5899****************************************973 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 203 aa Download sequence |
LIETEREMMS ANGDSPAGAA VTTPRSRLPR WTRHETLVLI QAKRVTEQRA AQPVRLKWAV 60 VSAYCRRHGV ERGPMQCRKR WGNLSWDLKK IVAWEKKARH CRRRRHGRRG LGGAGARVVL 120 GHARGGAARQ AAAVVVRPGG LRCHRRRRRR RQPAEAGLCR GDGARRRRGR TPAVADDGHA 180 HPSTSAPIRR RRAPRSRRRT RTR |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 142 | 151 | RCHRRRRRRR |
| 2 | 145 | 150 | RRRRRR |
| 3 | 145 | 151 | RRRRRRR |
| 4 | 145 | 168 | RRRRRRRQPAEAGLCRGDGARRRR |
| 5 | 146 | 151 | RRRRRR |
| 6 | 146 | 169 | RRRRRRRQPAEAGLCRGDGARRRR |
| 7 | 147 | 170 | RRRRRRRQPAEAGLCRGDGARRRR |
| 8 | 148 | 171 | RRRRRRRQPAEAGLCRGDGARRRR |
| 9 | 149 | 172 | RRRRRRRQPAEAGLCRGDGARRRR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G33550.1 | 6e-25 | Trihelix family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | TRIDC3BG070090.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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